Experiment: MoYLS4 with Polymyxin B sulfate 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1917 and DvMF_1918 are separated by 298 nucleotides DvMF_1918 and DvMF_1919 are separated by 139 nucleotides DvMF_1919 and DvMF_1920 are separated by 12 nucleotides
DvMF_1917: DvMF_1917 - heavy metal translocating P-type ATPase (RefSeq), at 2,362,328 to 2,364,280
_1917
DvMF_1918: DvMF_1918 - extracellular solute-binding protein family 3 (RefSeq), at 2,364,579 to 2,365,325
_1918
DvMF_1919: DvMF_1919 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 2,365,465 to 2,366,136
_1919
DvMF_1920: DvMF_1920 - ABC transporter related (RefSeq), at 2,366,149 to 2,366,898
_1920
Position (kb)
2364
2365
2366 Strain fitness (log2 ratio)
-1
0
1 at 2363.630 kb on + strand, within DvMF_1917 at 2363.730 kb on + strand, within DvMF_1917 at 2364.291 kb on - strand at 2364.296 kb on - strand at 2364.296 kb on - strand at 2364.366 kb on + strand at 2364.854 kb on + strand, within DvMF_1918 at 2365.019 kb on + strand, within DvMF_1918 at 2365.333 kb on - strand at 2365.476 kb on - strand at 2365.596 kb on + strand, within DvMF_1919 at 2365.604 kb on - strand, within DvMF_1919 at 2366.112 kb on + strand at 2366.225 kb on + strand, within DvMF_1920 at 2366.225 kb on + strand, within DvMF_1920 at 2366.233 kb on - strand, within DvMF_1920
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.0625 mg/ml remove 2,363,630 + DvMF_1917 0.67 +0.1 2,363,730 + DvMF_1917 0.72 -0.4 2,364,291 - -0.4 2,364,296 - -0.4 2,364,296 - -0.6 2,364,366 + -0.4 2,364,854 + DvMF_1918 0.37 +0.3 2,365,019 + DvMF_1918 0.59 +0.2 2,365,333 - +0.2 2,365,476 - +0.0 2,365,596 + DvMF_1919 0.19 +0.1 2,365,604 - DvMF_1919 0.21 +0.5 2,366,112 + +0.2 2,366,225 + DvMF_1920 0.10 +0.0 2,366,225 + DvMF_1920 0.10 +0.3 2,366,233 - DvMF_1920 0.11 +0.3
Or see this region's nucleotide sequence