Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1918

Experiment: MoYLS4 with Polymyxin B sulfate 0.0625 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1917 and DvMF_1918 are separated by 298 nucleotidesDvMF_1918 and DvMF_1919 are separated by 139 nucleotidesDvMF_1919 and DvMF_1920 are separated by 12 nucleotides DvMF_1917: DvMF_1917 - heavy metal translocating P-type ATPase (RefSeq), at 2,362,328 to 2,364,280 _1917 DvMF_1918: DvMF_1918 - extracellular solute-binding protein family 3 (RefSeq), at 2,364,579 to 2,365,325 _1918 DvMF_1919: DvMF_1919 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 2,365,465 to 2,366,136 _1919 DvMF_1920: DvMF_1920 - ABC transporter related (RefSeq), at 2,366,149 to 2,366,898 _1920 Position (kb) 2364 2365 2366Strain fitness (log2 ratio) -1 0 1at 2363.630 kb on + strand, within DvMF_1917at 2363.730 kb on + strand, within DvMF_1917at 2364.291 kb on - strandat 2364.296 kb on - strandat 2364.296 kb on - strandat 2364.366 kb on + strandat 2364.854 kb on + strand, within DvMF_1918at 2365.019 kb on + strand, within DvMF_1918at 2365.333 kb on - strandat 2365.476 kb on - strandat 2365.596 kb on + strand, within DvMF_1919at 2365.604 kb on - strand, within DvMF_1919at 2366.112 kb on + strandat 2366.225 kb on + strand, within DvMF_1920at 2366.225 kb on + strand, within DvMF_1920at 2366.233 kb on - strand, within DvMF_1920

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.0625 mg/ml
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2,363,630 + DvMF_1917 0.67 +0.1
2,363,730 + DvMF_1917 0.72 -0.4
2,364,291 - -0.4
2,364,296 - -0.4
2,364,296 - -0.6
2,364,366 + -0.4
2,364,854 + DvMF_1918 0.37 +0.3
2,365,019 + DvMF_1918 0.59 +0.2
2,365,333 - +0.2
2,365,476 - +0.0
2,365,596 + DvMF_1919 0.19 +0.1
2,365,604 - DvMF_1919 0.21 +0.5
2,366,112 + +0.2
2,366,225 + DvMF_1920 0.10 +0.0
2,366,225 + DvMF_1920 0.10 +0.3
2,366,233 - DvMF_1920 0.11 +0.3

Or see this region's nucleotide sequence