Experiment: MoYLS4 with Polymyxin B sulfate 0.0625 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0774 and DvMF_0775 are separated by 159 nucleotides DvMF_0775 and DvMF_0776 are separated by 10 nucleotides DvMF_0776 and DvMF_0777 overlap by 4 nucleotides DvMF_0777 and DvMF_0778 are separated by 135 nucleotides
DvMF_0774: DvMF_0774 - CheA signal transduction histidine kinase (RefSeq), at 928,063 to 931,155
_0774
DvMF_0775: DvMF_0775 - response regulator receiver protein (RefSeq), at 931,315 to 931,683
_0775
DvMF_0776: DvMF_0776 - CheW protein (RefSeq), at 931,694 to 932,380
_0776
DvMF_0777: DvMF_0777 - Cobyrinic acid ac-diamide synthase (RefSeq), at 932,377 to 933,150
_0777
DvMF_0778: DvMF_0778 - MCP methyltransferase, CheR-type (RefSeq), at 933,286 to 934,164
_0778
Position (kb) 931
932
933 Strain fitness (log2 ratio) -1
0
1 at 930.839 kb on - strand, within DvMF_0774 at 930.917 kb on - strand at 931.168 kb on + strand at 931.445 kb on - strand, within DvMF_0775 at 931.607 kb on - strand, within DvMF_0775 at 931.646 kb on + strand, within DvMF_0775 at 931.838 kb on + strand, within DvMF_0776 at 932.004 kb on - strand, within DvMF_0776 at 932.062 kb on - strand, within DvMF_0776 at 932.461 kb on - strand, within DvMF_0777 at 932.461 kb on - strand, within DvMF_0777 at 932.893 kb on - strand, within DvMF_0777 at 933.095 kb on - strand at 933.154 kb on - strand at 933.272 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.0625 mg/ml remove 930,839 - DvMF_0774 0.90 +1.2 930,917 - +0.7 931,168 + +0.1 931,445 - DvMF_0775 0.35 +0.8 931,607 - DvMF_0775 0.79 +0.6 931,646 + DvMF_0775 0.90 +0.4 931,838 + DvMF_0776 0.21 +0.4 932,004 - DvMF_0776 0.45 +0.3 932,062 - DvMF_0776 0.54 +0.6 932,461 - DvMF_0777 0.11 -0.1 932,461 - DvMF_0777 0.11 +0.2 932,893 - DvMF_0777 0.67 -0.3 933,095 - -0.3 933,154 - +0.1 933,272 - -0.1
Or see this region's nucleotide sequence