Strain Fitness in Shewanella loihica PV-4 around Shew_2604

Experiment: L-Malic (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Malic (C)
3,068,293	+				-0.3
3,068,293	+				-1.9
3,068,298	+				+0.6
3,068,301	-				+0.7
3,068,301	-				+0.0
3,068,301	-				+0.1
3,068,312	+				-1.1
3,068,312	+				+0.0
3,068,315	-				-0.2
3,068,320	-				-0.0
3,068,320	-				+1.5
3,068,336	+				+0.8
3,068,336	+				+0.4
3,068,336	+				-0.0
3,068,336	+				+2.2
3,068,337	+				+1.4
3,068,337	+				+0.1
3,068,338	-				+1.1
3,068,344	-				+0.3
3,068,344	-				+0.5
3,068,346	+				-0.0
3,068,346	+				-0.5
3,068,346	+				+0.3
3,068,346	+				+0.2
3,068,478	-		Shew_2602	0.37	-0.6
3,068,487	+		Shew_2602	0.40	+1.5
3,068,491	-		Shew_2602	0.41	-0.3
3,068,491	-		Shew_2602	0.41	-0.2
3,068,491	-		Shew_2602	0.41	-1.8
3,068,502	+		Shew_2602	0.45	-0.1
3,068,502	+		Shew_2602	0.45	+0.6
3,068,503	+		Shew_2602	0.45	+0.5
3,068,505	-		Shew_2602	0.46	+0.2
3,068,510	+		Shew_2602	0.48	+0.8
3,068,518	-		Shew_2602	0.50	+0.5
3,068,527	-		Shew_2602	0.53	-3.9
3,068,549	-		Shew_2602	0.61	-0.5
3,068,558	-		Shew_2602	0.64	+0.1
3,068,607	+		Shew_2602	0.80	-0.3
3,068,615	-		Shew_2602	0.83	-0.5
3,068,615	-		Shew_2602	0.83	+0.2
3,068,642	+				+0.8
3,068,650	+				-0.5
3,068,662	-				-0.3
3,068,690	+				+0.4
3,068,690	+				-1.8
3,068,690	+				+0.4
3,068,690	+				+0.7
3,068,690	+				+0.3
3,068,690	+				-0.5
3,068,690	+				+0.0
3,068,690	+				+0.3
3,068,690	+				+0.0
3,068,690	+				-0.8
3,068,690	+				+0.3
3,068,690	+				+1.0
3,068,690	+				+0.0
3,068,698	-				-0.5
3,068,698	-				+0.2
3,068,698	-				+0.5
3,068,698	-				+0.2
3,068,698	-				+1.3
3,068,698	-				+1.0
3,068,698	-				+1.2
3,068,698	-				-0.6
3,068,698	-				-0.1
3,068,698	-				-2.0
3,068,703	+				+0.1
3,068,705	+				-0.5
3,068,711	-				+0.4
3,068,711	-				+2.1
3,068,713	-				+0.2
3,068,721	-				+0.6
3,068,723	+				+1.5
3,068,725	+				+0.3
3,068,725	+				+1.3
3,068,725	+				+0.6
3,068,725	+				-0.5
3,068,731	-				-0.1
3,068,733	-				-0.7
3,068,733	-				-0.7
3,068,738	+				-2.6
3,068,738	+				+1.1
3,068,746	-				-0.4
3,068,759	-				+0.7
3,068,759	+				-0.5
3,068,778	+				+0.5
3,068,781	-				+0.1
3,068,781	+				+1.5
3,068,781	-				+0.8
3,068,786	-				+0.3
3,068,786	-				+0.3
3,068,787	+				+0.9
3,068,787	+				+1.5
3,068,787	+				+0.1
3,068,788	+				-0.9
3,068,788	+				+1.0
3,068,788	+				-1.4
3,068,788	+				+1.3
3,068,788	+				+0.9
3,068,788	+				+0.6
3,068,795	-		Shew_2603	0.10	+1.4
3,068,795	-		Shew_2603	0.10	-0.8
3,068,795	-		Shew_2603	0.10	-2.5
3,068,796	-		Shew_2603	0.10	-0.3
3,068,796	-		Shew_2603	0.10	+0.8
3,068,796	-		Shew_2603	0.10	+0.9
3,068,796	-		Shew_2603	0.10	-0.7
3,068,796	-		Shew_2603	0.10	-0.0
3,068,796	-		Shew_2603	0.10	+0.9
3,068,796	-		Shew_2603	0.10	-0.2
3,068,815	-		Shew_2603	0.16	-2.0
3,068,829	-		Shew_2603	0.20	+0.6
3,068,845	+		Shew_2603	0.25	+2.2
3,068,845	+		Shew_2603	0.25	-0.3
3,068,853	-		Shew_2603	0.28	+0.2
3,068,853	-		Shew_2603	0.28	+0.3
3,068,853	-		Shew_2603	0.28	+2.5
3,068,853	-		Shew_2603	0.28	+0.1
3,068,853	-		Shew_2603	0.28	-0.5
3,068,929	+		Shew_2603	0.51	-1.1
3,068,930	+		Shew_2603	0.51	+0.7
3,068,930	+		Shew_2603	0.51	+2.5
3,068,934	+		Shew_2603	0.53	-0.5
3,068,935	+		Shew_2603	0.53	+0.2
3,068,942	-		Shew_2603	0.55	-2.5
3,068,942	-		Shew_2603	0.55	-1.4
3,068,943	-		Shew_2603	0.55	-0.5
3,068,953	+		Shew_2603	0.58	-0.5
3,068,953	+		Shew_2603	0.58	+1.2
3,068,953	+		Shew_2603	0.58	-0.4
3,068,958	+		Shew_2603	0.60	-0.5
3,068,961	-		Shew_2603	0.61	+0.4
3,068,961	-		Shew_2603	0.61	+0.0
3,068,966	-		Shew_2603	0.62	+0.4
3,068,976	+		Shew_2603	0.65	-1.0
3,068,993	+		Shew_2603	0.71	+1.7
3,069,012	-		Shew_2603	0.76	-1.5
3,069,048	-		Shew_2603	0.87	+0.2
3,069,114	+				+1.7
3,069,116	+				-0.1
3,069,122	-				+0.4
3,069,122	-				+0.4
3,069,122	-				-1.0
3,069,122	-				+0.3
3,069,122	-				+2.9
3,069,122	-				-0.3
3,069,122	-				+0.4
3,069,122	-				-0.9
3,069,122	-				-0.4
3,069,124	-				+0.4
3,069,129	-				+0.8
3,069,164	+				-0.8
3,069,165	+				+0.3
3,069,173	-				+1.9
3,069,209	+				-0.7
3,069,240	+				+2.0
3,069,240	+				+1.8
3,069,245	+				+1.1
3,069,245	+				+0.0
3,069,245	+				+2.4
3,069,245	+				-0.2
3,069,245	+				-1.5
3,069,245	+				+1.6
3,069,245	+				+1.7
3,069,248	-				-0.1
3,069,252	+				+1.3
3,069,252	+				-0.0
3,069,253	-				+0.9
3,069,253	-				+0.3
3,069,253	-				+0.4
3,069,253	-				+0.3
3,069,253	-				-0.7
3,069,253	-				+0.5
3,069,253	-				-0.3
3,069,253	-				+0.2
3,069,253	-				-0.7
3,069,253	-				+1.1
3,069,253	-				-0.2
3,069,265	+				+0.4
3,069,265	+				+0.9
3,069,265	+				+0.0
3,069,265	+				+0.8
3,069,265	+				-0.5
3,069,265	+				+1.0
3,069,265	+				+0.7
3,069,265	+				+1.0
3,069,265	+				+0.8
3,069,266	+				-0.1
3,069,273	-				+0.2
3,069,273	-				-0.6
3,069,273	-				-0.8
3,069,273	-				+0.3
3,069,273	-				-0.5
3,069,273	-				-0.9
3,069,273	-				-3.0
3,069,273	-				-4.5
3,069,273	-				-0.3
3,069,273	-				-2.0
3,069,274	-				-0.2
3,069,274	-				-0.3
3,069,282	-				+0.5
3,069,282	-				+0.8
3,069,288	+				-2.8
3,069,296	-				-0.0
3,069,309	+		Shew_2604	0.11	+0.1
3,069,309	+		Shew_2604	0.11	+0.9
3,069,311	+		Shew_2604	0.11	+0.1
3,069,331	-		Shew_2604	0.13	-0.7
3,069,345	+		Shew_2604	0.15	+0.3
3,069,345	+		Shew_2604	0.15	+0.7
3,069,392	+		Shew_2604	0.21	+0.5
3,069,392	+		Shew_2604	0.21	-0.5
3,069,392	+		Shew_2604	0.21	-0.5
3,069,392	+		Shew_2604	0.21	+0.5
3,069,392	+		Shew_2604	0.21	+0.7
3,069,400	-		Shew_2604	0.22	-0.5
3,069,400	-		Shew_2604	0.22	+0.3
3,069,400	-		Shew_2604	0.22	+0.0
3,069,403	+		Shew_2604	0.22	+0.2
3,069,403	+		Shew_2604	0.22	+0.2
3,069,419	-		Shew_2604	0.24	+0.8
3,069,421	+		Shew_2604	0.25	+0.9
3,069,422	+		Shew_2604	0.25	+0.0
3,069,425	-		Shew_2604	0.25	-1.7
3,069,428	+		Shew_2604	0.25	+2.3
3,069,428	+		Shew_2604	0.25	+0.5
3,069,437	+		Shew_2604	0.27	-1.5
3,069,452	+		Shew_2604	0.28	-1.5
3,069,478	-		Shew_2604	0.32	+0.5
3,069,480	+		Shew_2604	0.32	+1.4
3,069,488	+		Shew_2604	0.33	-1.0
3,069,488	+		Shew_2604	0.33	+0.8
3,069,493	+		Shew_2604	0.34	+1.2
3,069,496	-		Shew_2604	0.34	+0.6
3,069,496	-		Shew_2604	0.34	+0.4
3,069,496	-		Shew_2604	0.34	-0.3
3,069,503	+		Shew_2604	0.35	-0.2
3,069,511	-		Shew_2604	0.36	+0.0
3,069,531	+		Shew_2604	0.38	-0.5
3,069,545	+		Shew_2604	0.40	-0.1
3,069,620	+		Shew_2604	0.49	+1.1
3,069,620	+		Shew_2604	0.49	+1.3
3,069,620	+		Shew_2604	0.49	+1.4
3,069,620	+		Shew_2604	0.49	-0.5
3,069,620	+		Shew_2604	0.49	+0.4
3,069,628	-		Shew_2604	0.50	-0.5
3,069,628	-		Shew_2604	0.50	-0.7
3,069,628	-		Shew_2604	0.50	-0.3
3,069,628	-		Shew_2604	0.50	+0.3
3,069,628	-		Shew_2604	0.50	-3.6
3,069,628	-		Shew_2604	0.50	+3.1
3,069,628	-		Shew_2604	0.50	+0.2
3,069,631	+		Shew_2604	0.51	+1.4
3,069,631	+		Shew_2604	0.51	+0.8
3,069,639	+		Shew_2604	0.52	+1.5
3,069,678	+		Shew_2604	0.57	+1.7
3,069,678	+		Shew_2604	0.57	+0.2
3,069,688	+		Shew_2604	0.58	+1.1
3,069,688	+		Shew_2604	0.58	+0.6
3,069,688	+		Shew_2604	0.58	+0.1
3,069,688	+		Shew_2604	0.58	+0.4
3,069,694	+		Shew_2604	0.59	+0.6
3,069,696	+		Shew_2604	0.59	+1.4
3,069,696	-		Shew_2604	0.59	+0.7
3,069,696	-		Shew_2604	0.59	-0.2
3,069,696	-		Shew_2604	0.59	-0.2
3,069,696	-		Shew_2604	0.59	+0.6
3,069,696	-		Shew_2604	0.59	+0.6
3,069,696	-		Shew_2604	0.59	-0.9
3,069,696	+		Shew_2604	0.59	-0.2
3,069,696	-		Shew_2604	0.59	+0.1
3,069,696	-		Shew_2604	0.59	+0.2
3,069,696	+		Shew_2604	0.59	+0.2
3,069,701	-		Shew_2604	0.60	-1.2
3,069,701	+		Shew_2604	0.60	+0.5
3,069,703	+		Shew_2604	0.60	+0.3
3,069,703	+		Shew_2604	0.60	-0.8
3,069,703	+		Shew_2604	0.60	-1.8
3,069,704	-		Shew_2604	0.60	+0.4
3,069,704	-		Shew_2604	0.60	-0.2
3,069,704	-		Shew_2604	0.60	+0.4
3,069,704	-		Shew_2604	0.60	-1.0
3,069,704	-		Shew_2604	0.60	+0.0
3,069,704	-		Shew_2604	0.60	-0.5
3,069,704	-		Shew_2604	0.60	+0.3
3,069,710	-		Shew_2604	0.61	+0.4
3,069,711	-		Shew_2604	0.61	+0.2
3,069,734	-		Shew_2604	0.64	-1.7
3,069,750	-		Shew_2604	0.66	+0.3
3,069,781	+		Shew_2604	0.70	+0.1
3,069,781	+		Shew_2604	0.70	-0.9
3,069,781	+		Shew_2604	0.70	+0.1
3,069,798	-		Shew_2604	0.72	+0.2
3,069,808	+		Shew_2604	0.73	+1.8
3,069,808	+		Shew_2604	0.73	+0.8
3,069,808	+		Shew_2604	0.73	+0.6
3,069,808	+		Shew_2604	0.73	+1.7
3,069,808	+		Shew_2604	0.73	-0.1
3,069,808	+		Shew_2604	0.73	-0.9
3,069,810	+		Shew_2604	0.73	-2.5
3,069,816	-		Shew_2604	0.74	+0.2
3,069,816	-		Shew_2604	0.74	+0.4
3,069,823	-		Shew_2604	0.75	+0.1
3,069,840	+		Shew_2604	0.77	+0.9
3,069,909	+		Shew_2604	0.86	+1.4
3,069,924	-		Shew_2604	0.87	-1.2
3,069,936	-		Shew_2604	0.89	+0.3
3,069,946	-				+0.2
3,069,977	-				+0.3
3,069,977	-				-0.5
3,070,106	+				+0.8
3,070,341	+				+0.5
3,070,373	+				-0.2
3,070,405	-				-0.5
3,070,439	-				-0.5
3,070,608	-				+0.9