Strain Fitness in Shewanella loihica PV-4 around Shew_1858

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1857 and Shew_1858 are separated by 89 nucleotidesShew_1858 and Shew_1859 are separated by 254 nucleotides Shew_1857: Shew_1857 - iron-containing alcohol dehydrogenase (RefSeq), at 2,135,944 to 2,137,014 _1857 Shew_1858: Shew_1858 - DegT/DnrJ/EryC1/StrS aminotransferase (RefSeq), at 2,137,104 to 2,138,291 _1858 Shew_1859: Shew_1859 - carbonate dehydratase (RefSeq), at 2,138,546 to 2,139,157 _1859 Position (kb) 2137 2138 2139Strain fitness (log2 ratio) -1 0 1at 2138.930 kb on + strand, within Shew_1859at 2139.227 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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2,138,930 + Shew_1859 0.63 +0.0
2,139,227 + -0.2

Or see this region's nucleotide sequence