Strain Fitness in Shewanella loihica PV-4 around Shew_1598

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1597 and Shew_1598 are separated by 430 nucleotidesShew_1598 and rpmF are separated by 17 nucleotidesrpmF and Shew_1600 are separated by 14 nucleotides Shew_1597: Shew_1597 - maf protein (RefSeq), at 1,830,705 to 1,831,301 _1597 Shew_1598: Shew_1598 - hypothetical protein (RefSeq), at 1,831,732 to 1,832,256 _1598 Shew_1599: rpmF - 50S ribosomal protein L32 (RefSeq), at 1,832,274 to 1,832,444 rpmF Shew_1600: Shew_1600 - putative glycerol-3-phosphate acyltransferase PlsX (RefSeq), at 1,832,459 to 1,833,487 _1600 Position (kb) 1831 1832 1833Strain fitness (log2 ratio) -2 -1 0 1at 1830.977 kb on + strand, within Shew_1597at 1830.985 kb on - strand, within Shew_1597

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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1,830,977 + Shew_1597 0.46 -2.6
1,830,985 - Shew_1597 0.47 +0.3

Or see this region's nucleotide sequence