Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0826 and Shew_0827 are separated by 110 nucleotides Shew_0827 and Shew_0828 are separated by 4 nucleotides Shew_0828 and Shew_0829 are separated by 100 nucleotides Shew_0829 and Shew_0830 are separated by 13 nucleotides
Shew_0826: Shew_0826 - hypothetical protein (RefSeq), at 949,026 to 949,949
_0826
Shew_0827: Shew_0827 - peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq), at 950,060 to 950,707
_0827
Shew_0828: Shew_0828 - LysR family transcriptional regulator (RefSeq), at 950,712 to 951,605
_0828
Shew_0829: Shew_0829 - LrgA family protein (RefSeq), at 951,706 to 952,125
_0829
Shew_0830: Shew_0830 - LrgB family protein (RefSeq), at 952,139 to 952,828
_0830
Position (kb) 950
951
952 Strain fitness (log2 ratio) -1
0
1 at 949.761 kb on + strand, within Shew_0826 at 949.796 kb on + strand, within Shew_0826 at 949.845 kb on + strand, within Shew_0826 at 949.853 kb on - strand, within Shew_0826 at 950.145 kb on - strand, within Shew_0827 at 950.676 kb on + strand at 950.696 kb on - strand at 951.502 kb on + strand, within Shew_0828 at 951.549 kb on + strand at 951.987 kb on + strand, within Shew_0829 at 952.010 kb on + strand, within Shew_0829 at 952.010 kb on - strand, within Shew_0829 at 952.018 kb on - strand, within Shew_0829 at 952.196 kb on - strand at 952.196 kb on - strand at 952.435 kb on - strand, within Shew_0830 at 952.501 kb on + strand, within Shew_0830
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 949,761 + Shew_0826 0.80 +0.2 949,796 + Shew_0826 0.83 -0.2 949,845 + Shew_0826 0.89 +0.3 949,853 - Shew_0826 0.90 -0.7 950,145 - Shew_0827 0.13 +1.4 950,676 + +0.5 950,696 - +0.5 951,502 + Shew_0828 0.88 -1.7 951,549 + +0.6 951,987 + Shew_0829 0.67 -0.9 952,010 + Shew_0829 0.72 +0.5 952,010 - Shew_0829 0.72 +0.6 952,018 - Shew_0829 0.74 -0.1 952,196 - +0.9 952,196 - -0.1 952,435 - Shew_0830 0.43 +0.4 952,501 + Shew_0830 0.52 -0.6
Or see this region's nucleotide sequence