Strain Fitness in Shewanella loihica PV-4 around Shew_0818

Experiment: L-Malic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0816 and Shew_0817 are separated by 11 nucleotidesShew_0817 and Shew_0818 are separated by 167 nucleotidesShew_0818 and Shew_0819 are separated by 40 nucleotidesShew_0819 and Shew_0820 are separated by 49 nucleotides Shew_0816: Shew_0816 - hypothetical protein (RefSeq), at 940,252 to 940,788 _0816 Shew_0817: Shew_0817 - cupin 2 domain-containing protein (RefSeq), at 940,800 to 941,117 _0817 Shew_0818: Shew_0818 - peptidase U32 (RefSeq), at 941,285 to 943,198 _0818 Shew_0819: Shew_0819 - hypothetical protein (RefSeq), at 943,239 to 943,613 _0819 Shew_0820: Shew_0820 - hypothetical protein (RefSeq), at 943,663 to 944,850 _0820 Position (kb) 941 942 943 944Strain fitness (log2 ratio) -2 -1 0 1at 940.489 kb on - strand, within Shew_0816at 940.722 kb on + strand, within Shew_0816at 940.773 kb on + strandat 941.015 kb on - strand, within Shew_0817at 941.637 kb on - strand, within Shew_0818at 941.743 kb on + strand, within Shew_0818at 941.762 kb on - strand, within Shew_0818at 941.797 kb on + strand, within Shew_0818at 942.071 kb on + strand, within Shew_0818at 942.079 kb on - strand, within Shew_0818at 942.180 kb on + strand, within Shew_0818at 942.293 kb on - strand, within Shew_0818at 942.534 kb on - strand, within Shew_0818at 942.661 kb on + strand, within Shew_0818at 942.721 kb on - strand, within Shew_0818at 942.896 kb on + strand, within Shew_0818at 943.632 kb on - strandat 943.666 kb on + strandat 943.732 kb on - strandat 943.825 kb on - strand, within Shew_0820at 943.926 kb on + strand, within Shew_0820at 943.926 kb on + strand, within Shew_0820at 943.926 kb on + strand, within Shew_0820at 943.934 kb on - strand, within Shew_0820at 943.934 kb on - strand, within Shew_0820at 944.183 kb on - strand, within Shew_0820

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Malic (C)
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940,489 - Shew_0816 0.44 +0.6
940,722 + Shew_0816 0.88 +0.9
940,773 + +1.1
941,015 - Shew_0817 0.68 -0.3
941,637 - Shew_0818 0.18 +0.9
941,743 + Shew_0818 0.24 -2.7
941,762 - Shew_0818 0.25 +0.4
941,797 + Shew_0818 0.27 +0.2
942,071 + Shew_0818 0.41 +1.3
942,079 - Shew_0818 0.41 -0.4
942,180 + Shew_0818 0.47 +0.5
942,293 - Shew_0818 0.53 +0.7
942,534 - Shew_0818 0.65 -0.1
942,661 + Shew_0818 0.72 +0.4
942,721 - Shew_0818 0.75 +0.3
942,896 + Shew_0818 0.84 -1.7
943,632 - +0.3
943,666 + +0.6
943,732 - +0.3
943,825 - Shew_0820 0.14 +0.2
943,926 + Shew_0820 0.22 +0.5
943,926 + Shew_0820 0.22 +1.0
943,926 + Shew_0820 0.22 -0.1
943,934 - Shew_0820 0.23 -0.0
943,934 - Shew_0820 0.23 +0.1
944,183 - Shew_0820 0.44 +0.6

Or see this region's nucleotide sequence