Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0589 and Shew_0590 are separated by 134 nucleotides Shew_0590 and Shew_0591 are separated by 150 nucleotides Shew_0591 and Shew_0592 are separated by 56 nucleotides Shew_0592 and Shew_0593 are separated by 67 nucleotides
Shew_0589: Shew_0589 - alpha/beta hydrolase fold (RefSeq), at 666,048 to 667,031
_0589
Shew_0590: Shew_0590 - hypothetical protein (RefSeq), at 667,166 to 667,672
_0590
Shew_0591: Shew_0591 - glucose-methanol-choline oxidoreductase (RefSeq), at 667,823 to 669,412
_0591
Shew_0592: Shew_0592 - hypothetical protein (RefSeq), at 669,469 to 669,918
_0592
Shew_0593: Shew_0593 - ABC transporter-related protein (RefSeq), at 669,986 to 671,896
_0593
Position (kb) 667
668
669
670 Strain fitness (log2 ratio) -2
-1
0
1
2 at 666.917 kb on + strand, within Shew_0589 at 666.946 kb on - strand at 667.371 kb on + strand, within Shew_0590 at 667.568 kb on - strand, within Shew_0590 at 667.568 kb on - strand, within Shew_0590 at 667.722 kb on + strand at 667.784 kb on + strand at 667.792 kb on - strand at 668.009 kb on - strand, within Shew_0591 at 668.440 kb on + strand, within Shew_0591 at 668.500 kb on + strand, within Shew_0591 at 668.768 kb on - strand, within Shew_0591 at 668.808 kb on + strand, within Shew_0591 at 668.887 kb on + strand, within Shew_0591 at 669.071 kb on + strand, within Shew_0591 at 669.247 kb on - strand, within Shew_0591 at 669.341 kb on - strand at 669.525 kb on + strand, within Shew_0592 at 669.596 kb on - strand, within Shew_0592 at 669.658 kb on - strand, within Shew_0592 at 669.933 kb on - strand at 669.953 kb on + strand at 669.966 kb on - strand at 670.058 kb on - strand at 670.069 kb on + strand at 670.092 kb on + strand at 670.125 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 666,917 + Shew_0589 0.88 +0.1 666,946 - -1.4 667,371 + Shew_0590 0.40 -1.0 667,568 - Shew_0590 0.79 +0.2 667,568 - Shew_0590 0.79 -0.3 667,722 + -0.6 667,784 + -1.4 667,792 - -0.1 668,009 - Shew_0591 0.12 +0.9 668,440 + Shew_0591 0.39 +0.2 668,500 + Shew_0591 0.43 +0.6 668,768 - Shew_0591 0.59 +1.9 668,808 + Shew_0591 0.62 +0.8 668,887 + Shew_0591 0.67 +0.4 669,071 + Shew_0591 0.78 +0.5 669,247 - Shew_0591 0.90 -0.3 669,341 - -0.6 669,525 + Shew_0592 0.12 +0.5 669,596 - Shew_0592 0.28 +0.2 669,658 - Shew_0592 0.42 -0.1 669,933 - -0.6 669,953 + -0.2 669,966 - +1.8 670,058 - -0.3 670,069 + -0.1 670,092 + -2.0 670,125 + -1.6
Or see this region's nucleotide sequence