Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0526 and Shew_0527 are separated by 42 nucleotides Shew_0527 and Shew_0528 are separated by 94 nucleotides Shew_0528 and Shew_0529 are separated by 79 nucleotides
Shew_0526: Shew_0526 - hypothetical protein (RefSeq), at 596,035 to 596,406
_0526
Shew_0527: Shew_0527 - Sel1 domain-containing protein (RefSeq), at 596,449 to 597,303
_0527
Shew_0528: Shew_0528 - Sel1 domain-containing protein (RefSeq), at 597,398 to 598,222
_0528
Shew_0529: Shew_0529 - Sel1 domain-containing protein (RefSeq), at 598,302 to 599,129
_0529
Position (kb) 597
598
599 Strain fitness (log2 ratio) -1
0
1
2 at 596.464 kb on + strand at 596.543 kb on + strand, within Shew_0527 at 596.690 kb on - strand, within Shew_0527 at 596.791 kb on - strand, within Shew_0527 at 596.801 kb on - strand, within Shew_0527 at 596.891 kb on - strand, within Shew_0527 at 596.917 kb on - strand, within Shew_0527 at 597.029 kb on + strand, within Shew_0527 at 597.029 kb on + strand, within Shew_0527 at 597.226 kb on - strand at 597.236 kb on + strand at 597.444 kb on - strand at 597.450 kb on - strand at 597.887 kb on - strand, within Shew_0528 at 597.945 kb on + strand, within Shew_0528 at 597.953 kb on - strand, within Shew_0528 at 597.992 kb on - strand, within Shew_0528 at 598.180 kb on + strand at 598.698 kb on - strand, within Shew_0529 at 599.062 kb on + strand at 599.219 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 596,464 + +0.1 596,543 + Shew_0527 0.11 -0.3 596,690 - Shew_0527 0.28 +0.4 596,791 - Shew_0527 0.40 +0.2 596,801 - Shew_0527 0.41 +0.3 596,891 - Shew_0527 0.52 +0.9 596,917 - Shew_0527 0.55 +0.1 597,029 + Shew_0527 0.68 -0.2 597,029 + Shew_0527 0.68 +0.2 597,226 - +1.9 597,236 + -0.7 597,444 - -0.1 597,450 - -0.3 597,887 - Shew_0528 0.59 -1.6 597,945 + Shew_0528 0.66 +1.1 597,953 - Shew_0528 0.67 -0.5 597,992 - Shew_0528 0.72 +1.4 598,180 + +0.3 598,698 - Shew_0529 0.48 +0.1 599,062 + +0.8 599,219 + -0.6
Or see this region's nucleotide sequence