Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0266 and Shew_0267 are separated by 69 nucleotides Shew_0267 and Shew_0268 are separated by 186 nucleotides Shew_0268 and Shew_0269 are separated by 96 nucleotides Shew_0269 and Shew_0270 are separated by 68 nucleotides Shew_0270 and Shew_0271 are separated by 140 nucleotides
Shew_0266: Shew_0266 - hypothetical protein (RefSeq), at 284,873 to 285,085
_0266
Shew_0267: Shew_0267 - hypothetical protein (RefSeq), at 285,155 to 285,361
_0267
Shew_0268: Shew_0268 - transcriptional antiterminator, Rof (RefSeq), at 285,548 to 285,829
_0268
Shew_0269: Shew_0269 - hypothetical protein (RefSeq), at 285,926 to 286,813
_0269
Shew_0270: Shew_0270 - hypothetical protein (RefSeq), at 286,882 to 287,517
_0270
Shew_0271: Shew_0271 - phospholipase (RefSeq), at 287,658 to 289,007
_0271
Position (kb) 285
286
287 Strain fitness (log2 ratio) -2
-1
0
1 at 285.085 kb on + strand at 285.607 kb on + strand, within Shew_0268 at 285.731 kb on - strand, within Shew_0268 at 285.746 kb on - strand, within Shew_0268 at 285.765 kb on + strand, within Shew_0268 at 285.829 kb on - strand at 286.022 kb on - strand, within Shew_0269 at 286.249 kb on + strand, within Shew_0269 at 286.347 kb on + strand, within Shew_0269 at 286.624 kb on + strand, within Shew_0269 at 287.616 kb on + strand at 287.697 kb on + strand at 287.697 kb on + strand at 287.705 kb on - strand at 287.737 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 285,085 + +0.1 285,607 + Shew_0268 0.21 +0.2 285,731 - Shew_0268 0.65 +0.7 285,746 - Shew_0268 0.70 -1.8 285,765 + Shew_0268 0.77 +0.5 285,829 - +0.1 286,022 - Shew_0269 0.11 -2.7 286,249 + Shew_0269 0.36 -0.2 286,347 + Shew_0269 0.47 -1.9 286,624 + Shew_0269 0.79 +0.5 287,616 + -0.9 287,697 + -0.9 287,697 + -0.0 287,705 - +0.4 287,737 - +0.6
Or see this region's nucleotide sequence