Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0073 and BT0074 overlap by 10 nucleotides BT0074 and BT0075 are separated by 932 nucleotides
BT0073: BT0073 - putative ABC transporter, ATP-binding protein (NCBI ptt file), at 69,588 to 71,018
BT0073
BT0074: BT0074 - hypothetical protein (NCBI ptt file), at 71,009 to 71,500
BT0074
BT0075: BT0075 - conserved hypothetical protein (NCBI ptt file), at 72,433 to 72,723
BT0075
Position (kb) 71
72 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 70.209 kb on + strand, within BT0073 at 70.265 kb on + strand, within BT0073 at 70.468 kb on + strand, within BT0073 at 70.469 kb on - strand, within BT0073 at 70.701 kb on - strand, within BT0073 at 70.859 kb on + strand, within BT0073 at 70.860 kb on - strand, within BT0073 at 70.994 kb on + strand at 70.994 kb on + strand at 71.029 kb on - strand at 71.030 kb on + strand at 71.031 kb on - strand at 71.034 kb on + strand at 71.116 kb on - strand, within BT0074 at 71.155 kb on + strand, within BT0074 at 71.156 kb on - strand, within BT0074 at 71.251 kb on - strand, within BT0074 at 71.251 kb on - strand, within BT0074 at 71.610 kb on + strand at 71.614 kb on - strand at 71.615 kb on + strand at 71.615 kb on + strand at 71.616 kb on - strand at 71.616 kb on - strand at 71.635 kb on + strand at 71.754 kb on + strand at 71.763 kb on + strand at 71.852 kb on - strand at 71.862 kb on + strand at 71.862 kb on + strand at 71.863 kb on - strand at 71.873 kb on - strand at 71.894 kb on - strand at 71.918 kb on + strand at 71.919 kb on - strand at 71.944 kb on + strand at 71.945 kb on - strand at 71.998 kb on + strand at 72.131 kb on - strand at 72.149 kb on - strand at 72.157 kb on + strand at 72.202 kb on + strand at 72.258 kb on - strand at 72.422 kb on - strand at 72.428 kb on - strand at 72.472 kb on - strand, within BT0075
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 70,209 + BT0073 0.43 +1.2 70,265 + BT0073 0.47 -0.1 70,468 + BT0073 0.61 -2.3 70,469 - BT0073 0.62 +0.1 70,701 - BT0073 0.78 +0.0 70,859 + BT0073 0.89 -2.6 70,860 - BT0073 0.89 +1.4 70,994 + +0.1 70,994 + -0.8 71,029 - +1.2 71,030 + -0.9 71,031 - -1.4 71,034 + -0.3 71,116 - BT0074 0.22 -0.6 71,155 + BT0074 0.30 -2.4 71,156 - BT0074 0.30 -1.4 71,251 - BT0074 0.49 -2.8 71,251 - BT0074 0.49 -2.7 71,610 + -1.1 71,614 - +0.9 71,615 + -0.8 71,615 + -1.2 71,616 - -2.3 71,616 - -0.4 71,635 + -0.6 71,754 + -3.3 71,763 + +0.6 71,852 - -1.5 71,862 + +0.2 71,862 + +2.9 71,863 - -0.8 71,873 - +0.2 71,894 - +1.4 71,918 + -1.0 71,919 - +1.4 71,944 + -1.4 71,945 - -1.0 71,998 + +0.2 72,131 - +2.3 72,149 - -1.0 72,157 + -0.4 72,202 + -0.1 72,258 - +0.0 72,422 - -2.4 72,428 - -0.5 72,472 - BT0075 0.13 -0.7
Or see this region's nucleotide sequence