Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around p5482_28

Experiment: D-Ribose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Ribose (C)
22,405	-				+0.4
22,474	-		p5482_27	0.12	-0.5
22,537	+		p5482_27	0.18	+2.2
22,567	+		p5482_27	0.21	-0.7
22,568	-		p5482_27	0.21	-2.3
22,568	-		p5482_27	0.21	+1.7
22,611	+		p5482_27	0.25	-1.6
22,611	+		p5482_27	0.25	+0.4
22,652	+		p5482_27	0.29	+0.1
22,652	+		p5482_27	0.29	+3.2
22,652	+		p5482_27	0.29	+0.7
22,653	-		p5482_27	0.29	+0.5
22,653	-		p5482_27	0.29	-0.0
22,653	-		p5482_27	0.29	-1.6
22,653	-		p5482_27	0.29	+0.7
22,659	-		p5482_27	0.30	+2.7
22,659	-		p5482_27	0.30	-0.7
22,698	-		p5482_27	0.33	+0.5
22,699	+		p5482_27	0.34	+0.3
22,700	-		p5482_27	0.34	+0.4
22,745	-		p5482_27	0.38	-0.6
22,762	+		p5482_27	0.39	-1.3
22,762	+		p5482_27	0.39	+3.2
22,762	+		p5482_27	0.39	-2.6
22,763	-		p5482_27	0.40	+0.9
22,769	+				+3.2
22,769	+		p5482_27	0.40	-0.0
22,769	+		p5482_27	0.40	-0.2
22,769	+		p5482_27	0.40	-0.7
22,769	+		p5482_27	0.40	+2.9
22,769	+		p5482_27	0.40	+0.7
22,770	-		p5482_27	0.40	+0.2
22,770	-		p5482_27	0.40	-0.8
22,770	-		p5482_27	0.40	+2.9
22,773	+		p5482_27	0.40	+2.2
22,774	-		p5482_27	0.41	+2.5
22,774	-		p5482_27	0.41	-0.1
22,774	-		p5482_27	0.41	-1.0
22,774	-		p5482_27	0.41	-0.9
22,774	-		p5482_27	0.41	+1.1
22,774	-		p5482_27	0.41	+1.2
22,780	+		p5482_27	0.41	+3.5
22,780	+		p5482_27	0.41	+1.3
22,780	+		p5482_27	0.41	-0.8
22,780	+		p5482_27	0.41	-1.6
22,781	-		p5482_27	0.41	+0.4
22,844	+		p5482_27	0.47	+2.9
22,844	+		p5482_27	0.47	+0.8
22,844	+		p5482_27	0.47	+1.0
22,872	-		p5482_27	0.50	+1.3
22,872	-		p5482_27	0.50	-0.6
22,872	-		p5482_27	0.50	+3.2
22,896	+		p5482_27	0.52	-0.7
22,896	+		p5482_27	0.52	-1.8
22,897	-		p5482_27	0.52	+3.2
22,897	-		p5482_27	0.52	-1.2
22,897	-		p5482_27	0.52	-0.5
22,949	+		p5482_27	0.57	+1.2
22,949	+		p5482_27	0.57	-0.2
22,949	+		p5482_27	0.57	+0.5
22,949	+		p5482_27	0.57	-0.6
22,949	+		p5482_27	0.57	+1.7
22,949	+		p5482_27	0.57	-0.0
22,949	+		p5482_27	0.57	-1.4
22,949	+		p5482_27	0.57	-2.2
22,949	+		p5482_27	0.57	-0.1
22,949	+		p5482_27	0.57	-0.2
22,950	-		p5482_27	0.57	-0.3
22,950	-		p5482_27	0.57	+1.4
22,950	-		p5482_27	0.57	+0.1
22,950	-		p5482_27	0.57	+0.2
22,950	-		p5482_27	0.57	-1.5
22,950	-		p5482_27	0.57	+0.9
22,950	-		p5482_27	0.57	-0.1
22,979	-		p5482_27	0.60	+2.3
22,983	-		p5482_27	0.60	+1.7
22,983	-		p5482_27	0.60	-2.0
22,983	-		p5482_27	0.60	-0.3
22,983	-		p5482_27	0.60	-0.6
22,994	+		p5482_27	0.61	-0.0
23,075	+		p5482_27	0.69	+0.4
23,075	+		p5482_27	0.69	-1.0
23,076	-		p5482_27	0.69	-2.7
23,086	-		p5482_27	0.70	-0.5
23,093	+		p5482_27	0.71	+0.7
23,094	-		p5482_27	0.71	-0.4
23,120	+		p5482_27	0.73	-0.5
23,120	+		p5482_27	0.73	+0.8
23,121	-		p5482_27	0.73	-2.6
23,121	-		p5482_27	0.73	+0.9
23,156	-		p5482_27	0.77	+1.7
23,165	+		p5482_27	0.77	-0.6
23,165	+		p5482_27	0.77	-0.0
23,166	-		p5482_27	0.77	-1.0
23,183	+		p5482_27	0.79	+0.9
23,243	+		p5482_27	0.85	-1.7
23,243	+		p5482_27	0.85	+0.4
23,258	+		p5482_27	0.86	-0.1
23,258	+		p5482_27	0.86	-0.6
23,263	+		p5482_27	0.87	-0.1
23,263	+		p5482_27	0.87	+3.8
23,264	-		p5482_27	0.87	+1.7
23,264	-		p5482_27	0.87	-1.3
23,264	-		p5482_27	0.87	+0.3
23,267	+		p5482_27	0.87	-0.8
23,267	+		p5482_27	0.87	+0.4
23,267	+		p5482_27	0.87	+1.9
23,267	+		p5482_27	0.87	+1.7
23,267	+		p5482_27	0.87	-2.2
23,268	-		p5482_27	0.87	-2.0
23,268	-		p5482_27	0.87	+2.1
23,268	-		p5482_27	0.87	+1.2
23,268	-		p5482_27	0.87	-2.7
23,288	+		p5482_27	0.89	-0.5
23,288	+		p5482_27	0.89	+0.4
23,288	+		p5482_27	0.89	-1.7
23,288	+		p5482_27	0.89	-2.3
23,288	+		p5482_27	0.89	+0.0
23,289	-		p5482_27	0.89	-0.3
23,289	-		p5482_27	0.89	+3.2
23,289	-		p5482_27	0.89	+0.2
23,289	-		p5482_27	0.89	-0.2
23,352	+				+1.9
23,405	+				-1.5
23,405	+				-1.5
23,412	-				+2.7
23,419	-				-0.7
23,433	-				-0.3
23,466	+		p5482_28	0.12	-2.2
23,474	+		p5482_28	0.12	+3.2
23,475	-		p5482_28	0.13	+0.3
23,479	+		p5482_28	0.13	-1.1
23,480	-		p5482_28	0.13	-2.9
23,480	-		p5482_28	0.13	-1.2
23,511	-		p5482_28	0.16	+0.9
23,568	-		p5482_28	0.22	+0.5
23,568	-		p5482_28	0.22	-1.9
23,568	-		p5482_28	0.22	+0.9
23,568	-		p5482_28	0.22	+0.4
23,573	-		p5482_28	0.23	-1.7
23,603	+		p5482_28	0.26	+2.1
23,604	-		p5482_28	0.26	+2.2
23,604	-		p5482_28	0.26	+2.4
23,678	-		p5482_28	0.34	+3.2
23,716	+		p5482_28	0.37	-1.8
23,717	-		p5482_28	0.38	-0.7
23,717	-		p5482_28	0.38	-0.5
23,806	-		p5482_28	0.47	+1.3
23,806	-		p5482_28	0.47	+1.9
23,806	-		p5482_28	0.47	+3.2
23,806	-		p5482_28	0.47	-1.1
23,806	-		p5482_28	0.47	-0.9
23,806	-		p5482_28	0.47	+2.5
23,806	-		p5482_28	0.47	-0.5
23,807	+		p5482_28	0.47	-2.2
23,808	-		p5482_28	0.47	+0.7
23,808	-		p5482_28	0.47	-0.1
23,852	+		p5482_28	0.51	+0.3
23,852	+		p5482_28	0.51	-0.5
23,853	-		p5482_28	0.52	+3.2
23,856	-		p5482_28	0.52	-2.6
23,856	-		p5482_28	0.52	+0.8
23,862	-		p5482_28	0.53	+0.7
23,862	-		p5482_28	0.53	+1.9
23,879	+		p5482_28	0.54	-0.7
23,888	-		p5482_28	0.55	+1.2
23,888	-		p5482_28	0.55	-2.6
23,888	-		p5482_28	0.55	-0.8
23,894	-		p5482_28	0.56	+1.7
23,894	-		p5482_28	0.56	+2.2
23,894	-		p5482_28	0.56	-0.9
23,894	-		p5482_28	0.56	+1.4
23,894	-		p5482_28	0.56	+3.2
23,894	-		p5482_28	0.56	-1.1
23,971	-		p5482_28	0.64	+1.6
23,971	-		p5482_28	0.64	-0.6
24,048	+		p5482_28	0.72	-0.8
24,048	+		p5482_28	0.72	-1.8
24,049	-		p5482_28	0.72	-1.2
24,049	-		p5482_28	0.72	+1.5
24,051	-		p5482_28	0.72	-1.4
24,051	-		p5482_28	0.72	+1.3
24,061	+		p5482_28	0.73	+0.9
24,062	-		p5482_28	0.73	+0.1
24,063	+		p5482_28	0.73	-1.5
24,064	-		p5482_28	0.73	+1.7
24,064	-		p5482_28	0.73	+0.2
24,113	-		p5482_28	0.78	-0.8
24,113	-		p5482_28	0.78	-0.8
24,139	+		p5482_28	0.81	+0.1
24,143	+		p5482_28	0.82	+1.2
24,143	+		p5482_28	0.82	+3.2
24,196	-		p5482_28	0.87	-2.2
24,229	+				+1.3
24,229	+				-1.0
24,230	-				+2.8
24,230	-				+1.6
24,236	+				-0.8
24,311	+				+0.2
24,312	-				+1.4
24,312	-				-4.1
24,312	-				+3.2
24,312	-				+3.2
24,312	-				-0.4
24,376	+				-1.2
24,381	+				+0.1
24,381	+				+0.8
24,382	-				-0.5
24,382	-				-0.2
24,405	+				-0.2
24,405	+				-1.8
24,405	+				+0.6
24,408	+				+2.3
24,409	-				+0.1
24,409	-				+1.0
24,476	-				-0.7
24,483	+		p5482_29	0.11	-0.1
24,484	-		p5482_29	0.11	-2.8
24,487	+		p5482_29	0.11	-1.0
24,487	+		p5482_29	0.11	-0.3
24,487	+		p5482_29	0.11	-1.1
24,487	+		p5482_29	0.11	+3.2
24,488	-		p5482_29	0.11	+0.7
24,488	-		p5482_29	0.11	+1.0
24,508	+		p5482_29	0.13	-0.2
24,514	+		p5482_29	0.13	+3.2
24,514	+		p5482_29	0.13	+0.4
24,515	-		p5482_29	0.13	-0.7
24,517	+		p5482_29	0.14	-0.5
24,518	-		p5482_29	0.14	+3.2
24,575	-		p5482_29	0.19	+0.6
24,575	-		p5482_29	0.19	+0.7
24,575	-		p5482_29	0.19	-1.1
24,653	+		p5482_29	0.26	-1.0
24,653	+		p5482_29	0.26	+0.4
24,654	-		p5482_29	0.26	-3.3
24,704	+		p5482_29	0.30	-1.6
24,728	-		p5482_29	0.32	-1.5
24,749	+		p5482_29	0.34	+3.2
24,749	+		p5482_29	0.34	-0.4
24,750	-		p5482_29	0.34	+4.6
24,751	+		p5482_29	0.34	-0.0
24,751	+		p5482_29	0.34	-1.1
24,783	+		p5482_29	0.37	-2.4
24,784	-		p5482_29	0.37	+0.8
24,784	-		p5482_29	0.37	+2.7
24,788	+		p5482_29	0.38	-1.3
24,788	+		p5482_29	0.38	+0.9
24,789	-		p5482_29	0.38	-0.7
24,789	-		p5482_29	0.38	-0.7
24,789	-		p5482_29	0.38	-1.0
24,789	-		p5482_29	0.38	+2.2
24,790	+		p5482_29	0.38	+1.5
24,790	+		p5482_29	0.38	-2.7
24,790	+		p5482_29	0.38	+0.1
24,790	+		p5482_29	0.38	+0.6
24,791	-		p5482_29	0.38	+1.7
24,791	-		p5482_29	0.38	+0.8
24,806	+		p5482_29	0.39	+0.4
24,818	-		p5482_29	0.40	+1.2
24,820	+		p5482_29	0.41	-0.8
24,820	+		p5482_29	0.41	-0.9
24,820	+		p5482_29	0.41	+0.9
24,821	-		p5482_29	0.41	+1.7
24,821	-		p5482_29	0.41	-0.1
24,833	+		p5482_29	0.42	+1.5
24,834	-		p5482_29	0.42	-2.5
24,845	+		p5482_29	0.43	+1.1
24,845	+		p5482_29	0.43	+1.8
24,845	+		p5482_29	0.43	+1.9
24,845	+		p5482_29	0.43	-0.8
24,846	-		p5482_29	0.43	-0.0
24,846	-		p5482_29	0.43	+2.7
24,846	-		p5482_29	0.43	+1.7
24,846	-		p5482_29	0.43	+0.8
24,846	-		p5482_29	0.43	+1.1
24,898	+		p5482_29	0.48	-1.8
24,910	+		p5482_29	0.49	+0.8
24,911	-		p5482_29	0.49	+1.8
24,911	-		p5482_29	0.49	-3.9
24,911	-		p5482_29	0.49	-2.6
24,928	-		p5482_29	0.50	-2.6
24,928	-		p5482_29	0.50	+0.1
24,948	-		p5482_29	0.52	+1.8
24,948	-		p5482_29	0.52	-0.2
24,952	+		p5482_29	0.52	+3.2
25,081	+		p5482_29	0.64	-0.1
25,081	+		p5482_29	0.64	-1.3
25,081	+		p5482_29	0.64	+1.0
25,082	-		p5482_29	0.64	+1.7
25,114	+		p5482_29	0.67	-0.7
25,114	+				+3.2
25,114	+		p5482_29	0.67	+0.7
25,115	-		p5482_29	0.67	-2.3
25,115	-		p5482_29	0.67	+1.8
25,115	-		p5482_29	0.67	+1.8
25,129	+		p5482_29	0.68	+2.5
25,136	-		p5482_29	0.69	+1.8
25,138	+		p5482_29	0.69	+0.5
25,139	-		p5482_29	0.69	+0.5
25,139	-		p5482_29	0.69	+2.2
25,139	-		p5482_29	0.69	+1.2
25,139	-		p5482_29	0.69	-0.9
25,139	-		p5482_29	0.69	-0.7
25,147	+		p5482_29	0.70	+0.3
25,147	+		p5482_29	0.70	+2.2
25,147	+		p5482_29	0.70	+4.2
25,147	+		p5482_29	0.70	-0.1
25,148	-		p5482_29	0.70	-1.9
25,148	-		p5482_29	0.70	+0.7
25,148	-		p5482_29	0.70	-1.3
25,148	-		p5482_29	0.70	-2.5
25,148	-		p5482_29	0.70	-0.5
25,148	-		p5482_29	0.70	-3.7
25,154	-		p5482_29	0.70	+2.2
25,162	+		p5482_29	0.71	-1.4
25,163	-		p5482_29	0.71	+1.4
25,163	-		p5482_29	0.71	-1.2
25,164	+		p5482_29	0.71	-2.1
25,164	+		p5482_29	0.71	+2.4
25,165	-		p5482_29	0.71	-0.8
25,165	-		p5482_29	0.71	+0.9
25,283	+		p5482_29	0.82	-2.2
25,283	+		p5482_29	0.82	+0.2
25,319	+		p5482_29	0.85	+1.7
25,319	+		p5482_29	0.85	-1.7
25,319	+		p5482_29	0.85	+0.4
25,320	-		p5482_29	0.85	+1.1
25,320	-		p5482_29	0.85	-0.4