Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2523

Experiment: Flask growth in 60 uE Light-Dark 8:16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntgpsA and Synpcc7942_2522 are separated by 57 nucleotidesSynpcc7942_2522 and Synpcc7942_2523 overlap by 2 nucleotidesSynpcc7942_2523 and tig are separated by 11 nucleotides Synpcc7942_2521: gpsA - Nucleotide binding protein, PINc, at 2,602,698 to 2,604,026 gpsA Synpcc7942_2522: Synpcc7942_2522 - Glycerol-3-phosphate dehydrogenase (NAD(P)+), at 2,604,084 to 2,605,010 _2522 Synpcc7942_2523: Synpcc7942_2523 - hypothetical protein, at 2,605,009 to 2,605,266 _2523 Synpcc7942_2524: tig - trigger factor, at 2,605,278 to 2,606,702 tig Position (kb) 2605 2606Strain fitness (log2 ratio) -1 0 1at 2604.036 kb on - strandat 2604.051 kb on + strandat 2604.051 kb on + strandat 2604.051 kb on + strandat 2604.051 kb on + strandat 2604.051 kb on + strandat 2604.051 kb on + strandat 2604.051 kb on + strandat 2604.051 kb on + strandat 2604.051 kb on + strandat 2604.064 kb on - strandat 2605.002 kb on - strandat 2605.012 kb on + strandat 2605.013 kb on + strandat 2605.013 kb on + strandat 2605.021 kb on - strandat 2605.026 kb on - strandat 2605.030 kb on + strandat 2605.070 kb on + strand, within Synpcc7942_2523at 2605.070 kb on + strand, within Synpcc7942_2523at 2605.083 kb on - strand, within Synpcc7942_2523at 2605.280 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 8:16
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2,604,036 - -1.1
2,604,051 + -0.0
2,604,051 + +0.7
2,604,051 + +0.2
2,604,051 + +0.5
2,604,051 + +0.2
2,604,051 + +0.2
2,604,051 + -0.3
2,604,051 + +0.3
2,604,051 + -0.1
2,604,064 - +0.1
2,605,002 - +1.7
2,605,012 + -0.8
2,605,013 + +0.3
2,605,013 + -1.3
2,605,021 - +0.1
2,605,026 - +1.2
2,605,030 + +0.3
2,605,070 + Synpcc7942_2523 0.24 -0.4
2,605,070 + Synpcc7942_2523 0.24 -0.6
2,605,083 - Synpcc7942_2523 0.29 -1.3
2,605,280 - -0.2

Or see this region's nucleotide sequence