Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1902

Experiment: Flask growth in 60 uE Light-Dark 8:16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_1901 and Synpcc7942_1902 are separated by 92 nucleotidesSynpcc7942_1902 and Synpcc7942_1903 are separated by 4 nucleotides Synpcc7942_1901: Synpcc7942_1901 - putative glycosyltransferase, at 1,973,458 to 1,975,839 _1901 Synpcc7942_1902: Synpcc7942_1902 - putative glycosyltransferase, at 1,975,932 to 1,976,978 _1902 Synpcc7942_1903: Synpcc7942_1903 - hypothetical protein, at 1,976,983 to 1,978,113 _1903 Position (kb) 1975 1976 1977Strain fitness (log2 ratio) -2 -1 0 1at 1975.923 kb on - strandat 1976.080 kb on - strand, within Synpcc7942_1902at 1976.664 kb on - strand, within Synpcc7942_1902at 1976.675 kb on + strand, within Synpcc7942_1902at 1977.071 kb on - strandat 1977.517 kb on + strand, within Synpcc7942_1903at 1977.718 kb on - strand, within Synpcc7942_1903at 1977.835 kb on - strand, within Synpcc7942_1903

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 8:16
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1,975,923 - -0.2
1,976,080 - Synpcc7942_1902 0.14 -0.5
1,976,664 - Synpcc7942_1902 0.70 -0.8
1,976,675 + Synpcc7942_1902 0.71 -1.1
1,977,071 - -1.0
1,977,517 + Synpcc7942_1903 0.47 -1.0
1,977,718 - Synpcc7942_1903 0.65 -1.1
1,977,835 - Synpcc7942_1903 0.75 -2.1

Or see this region's nucleotide sequence