Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1901

Experiment: Flask growth in 60 uE Light-Dark 8:16

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_1899 and dcd are separated by 53 nucleotidesdcd and Synpcc7942_1901 are separated by 44 nucleotidesSynpcc7942_1901 and Synpcc7942_1902 are separated by 92 nucleotides Synpcc7942_1899: Synpcc7942_1899 - hypothetical protein, at 1,972,290 to 1,972,778 _1899 Synpcc7942_1900: dcd - deoxycytidine triphosphate deaminase, at 1,972,832 to 1,973,413 dcd Synpcc7942_1901: Synpcc7942_1901 - putative glycosyltransferase, at 1,973,458 to 1,975,839 _1901 Synpcc7942_1902: Synpcc7942_1902 - putative glycosyltransferase, at 1,975,932 to 1,976,978 _1902 Position (kb) 1973 1974 1975 1976Strain fitness (log2 ratio) -2 -1 0 1 2at 1972.481 kb on - strand, within Synpcc7942_1899at 1972.488 kb on + strand, within Synpcc7942_1899at 1972.490 kb on + strand, within Synpcc7942_1899at 1972.490 kb on + strand, within Synpcc7942_1899at 1972.495 kb on + strand, within Synpcc7942_1899at 1972.498 kb on - strand, within Synpcc7942_1899at 1972.521 kb on - strand, within Synpcc7942_1899at 1972.521 kb on - strand, within Synpcc7942_1899at 1972.523 kb on + strand, within Synpcc7942_1899at 1972.523 kb on + strand, within Synpcc7942_1899at 1972.523 kb on + strand, within Synpcc7942_1899at 1972.531 kb on - strand, within Synpcc7942_1899at 1972.531 kb on - strand, within Synpcc7942_1899at 1972.531 kb on - strand, within Synpcc7942_1899at 1972.531 kb on - strand, within Synpcc7942_1899at 1972.536 kb on - strand, within Synpcc7942_1899at 1972.546 kb on + strand, within Synpcc7942_1899at 1972.546 kb on + strand, within Synpcc7942_1899at 1972.551 kb on + strand, within Synpcc7942_1899at 1972.554 kb on - strand, within Synpcc7942_1899at 1972.566 kb on - strand, within Synpcc7942_1899at 1972.642 kb on - strand, within Synpcc7942_1899at 1972.661 kb on - strand, within Synpcc7942_1899at 1972.676 kb on + strand, within Synpcc7942_1899at 1972.677 kb on - strand, within Synpcc7942_1899at 1972.742 kb on - strandat 1972.747 kb on + strandat 1972.762 kb on + strandat 1972.762 kb on - strandat 1972.762 kb on - strandat 1972.770 kb on - strandat 1972.809 kb on - strandat 1973.397 kb on + strandat 1973.407 kb on + strandat 1973.407 kb on + strandat 1973.415 kb on - strandat 1973.415 kb on - strandat 1973.415 kb on - strandat 1973.494 kb on - strandat 1973.867 kb on - strand, within Synpcc7942_1901at 1974.301 kb on - strand, within Synpcc7942_1901at 1974.681 kb on + strand, within Synpcc7942_1901at 1975.923 kb on - strandat 1976.080 kb on - strand, within Synpcc7942_1902at 1976.664 kb on - strand, within Synpcc7942_1902at 1976.675 kb on + strand, within Synpcc7942_1902

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Per-strain Table

Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 8:16
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1,972,481 - Synpcc7942_1899 0.39 -0.7
1,972,488 + Synpcc7942_1899 0.40 +0.3
1,972,490 + Synpcc7942_1899 0.41 -0.9
1,972,490 + Synpcc7942_1899 0.41 +0.3
1,972,495 + Synpcc7942_1899 0.42 +0.2
1,972,498 - Synpcc7942_1899 0.43 +0.3
1,972,521 - Synpcc7942_1899 0.47 -0.4
1,972,521 - Synpcc7942_1899 0.47 +1.1
1,972,523 + Synpcc7942_1899 0.48 +0.3
1,972,523 + Synpcc7942_1899 0.48 +0.2
1,972,523 + Synpcc7942_1899 0.48 +0.3
1,972,531 - Synpcc7942_1899 0.49 -0.5
1,972,531 - Synpcc7942_1899 0.49 -2.1
1,972,531 - Synpcc7942_1899 0.49 +0.5
1,972,531 - Synpcc7942_1899 0.49 -0.2
1,972,536 - Synpcc7942_1899 0.50 +0.3
1,972,546 + Synpcc7942_1899 0.52 -1.5
1,972,546 + Synpcc7942_1899 0.52 -0.1
1,972,551 + Synpcc7942_1899 0.53 +0.5
1,972,554 - Synpcc7942_1899 0.54 +0.1
1,972,566 - Synpcc7942_1899 0.56 -0.8
1,972,642 - Synpcc7942_1899 0.72 +0.1
1,972,661 - Synpcc7942_1899 0.76 +0.0
1,972,676 + Synpcc7942_1899 0.79 +0.3
1,972,677 - Synpcc7942_1899 0.79 -0.1
1,972,742 - +1.9
1,972,747 + -1.0
1,972,762 + -0.1
1,972,762 - +1.4
1,972,762 - -0.5
1,972,770 - +0.8
1,972,809 - -0.2
1,973,397 + +0.7
1,973,407 + -0.7
1,973,407 + -1.3
1,973,415 - +0.1
1,973,415 - +0.3
1,973,415 - -0.8
1,973,494 - +0.8
1,973,867 - Synpcc7942_1901 0.17 -0.2
1,974,301 - Synpcc7942_1901 0.35 -1.1
1,974,681 + Synpcc7942_1901 0.51 -0.1
1,975,923 - -0.2
1,976,080 - Synpcc7942_1902 0.14 -0.5
1,976,664 - Synpcc7942_1902 0.70 -0.8
1,976,675 + Synpcc7942_1902 0.71 -1.1

Or see this region's nucleotide sequence