Experiment: Flask growth in 60 uE Light-Dark 8:16
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0080 and Synpcc7942_0081 are separated by 115 nucleotides Synpcc7942_0081 and mdlB are separated by 68 nucleotides
Synpcc7942_0080: Synpcc7942_0080 - probable ABC transporter permease protein, at 77,648 to 78,871
_0080
Synpcc7942_0081: Synpcc7942_0081 - RNA-binding S4, at 78,987 to 79,196
_0081
Synpcc7942_0082: mdlB - ATPase, at 79,265 to 81,013
mdlB
Position (kb)
78
79
80 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 78.019 kb on + strand, within Synpcc7942_0080 at 78.019 kb on + strand, within Synpcc7942_0080 at 78.019 kb on + strand, within Synpcc7942_0080 at 78.027 kb on - strand, within Synpcc7942_0080 at 78.027 kb on - strand, within Synpcc7942_0080 at 78.033 kb on - strand, within Synpcc7942_0080 at 78.039 kb on - strand, within Synpcc7942_0080 at 78.047 kb on + strand, within Synpcc7942_0080 at 78.047 kb on + strand, within Synpcc7942_0080 at 78.075 kb on + strand, within Synpcc7942_0080 at 78.151 kb on + strand at 78.151 kb on + strand, within Synpcc7942_0080 at 78.159 kb on - strand, within Synpcc7942_0080 at 78.159 kb on - strand, within Synpcc7942_0080 at 78.184 kb on + strand, within Synpcc7942_0080 at 78.192 kb on - strand, within Synpcc7942_0080 at 78.194 kb on + strand, within Synpcc7942_0080 at 78.194 kb on + strand at 78.204 kb on - strand, within Synpcc7942_0080 at 78.204 kb on - strand, within Synpcc7942_0080 at 78.210 kb on + strand, within Synpcc7942_0080 at 78.211 kb on - strand, within Synpcc7942_0080 at 78.245 kb on + strand, within Synpcc7942_0080 at 78.253 kb on - strand, within Synpcc7942_0080 at 78.255 kb on + strand, within Synpcc7942_0080 at 78.260 kb on - strand, within Synpcc7942_0080 at 78.301 kb on - strand, within Synpcc7942_0080 at 78.312 kb on - strand, within Synpcc7942_0080 at 78.318 kb on - strand, within Synpcc7942_0080 at 78.333 kb on + strand, within Synpcc7942_0080 at 78.398 kb on + strand, within Synpcc7942_0080 at 78.398 kb on + strand, within Synpcc7942_0080 at 78.463 kb on + strand, within Synpcc7942_0080 at 78.471 kb on - strand, within Synpcc7942_0080 at 78.471 kb on - strand, within Synpcc7942_0080 at 78.471 kb on - strand, within Synpcc7942_0080 at 78.496 kb on - strand, within Synpcc7942_0080 at 78.506 kb on + strand, within Synpcc7942_0080 at 78.506 kb on + strand, within Synpcc7942_0080 at 78.516 kb on - strand, within Synpcc7942_0080 at 78.536 kb on - strand, within Synpcc7942_0080 at 78.552 kb on + strand, within Synpcc7942_0080 at 78.567 kb on - strand, within Synpcc7942_0080 at 78.582 kb on + strand, within Synpcc7942_0080 at 78.658 kb on + strand, within Synpcc7942_0080 at 78.664 kb on + strand, within Synpcc7942_0080 at 78.694 kb on + strand, within Synpcc7942_0080 at 78.712 kb on + strand, within Synpcc7942_0080 at 78.727 kb on + strand, within Synpcc7942_0080 at 78.739 kb on + strand, within Synpcc7942_0080 at 78.739 kb on + strand, within Synpcc7942_0080 at 78.739 kb on + strand, within Synpcc7942_0080 at 78.747 kb on - strand, within Synpcc7942_0080 at 78.747 kb on - strand, within Synpcc7942_0080 at 78.759 kb on - strand at 78.760 kb on + strand at 78.768 kb on - strand at 78.773 kb on + strand at 78.802 kb on - strand at 78.802 kb on - strand at 78.819 kb on - strand at 78.847 kb on + strand at 78.867 kb on - strand at 78.877 kb on - strand at 78.881 kb on - strand at 78.912 kb on + strand at 78.931 kb on + strand at 78.936 kb on + strand at 78.939 kb on - strand at 78.939 kb on - strand at 78.944 kb on - strand at 78.947 kb on + strand at 78.953 kb on + strand at 78.956 kb on - strand at 78.961 kb on - strand at 78.961 kb on - strand at 78.961 kb on - strand at 78.961 kb on - strand at 78.992 kb on - strand at 78.993 kb on - strand at 78.998 kb on - strand at 79.009 kb on + strand, within Synpcc7942_0081 at 79.009 kb on + strand, within Synpcc7942_0081 at 79.042 kb on + strand, within Synpcc7942_0081 at 79.069 kb on + strand, within Synpcc7942_0081 at 79.080 kb on + strand, within Synpcc7942_0081 at 79.114 kb on + strand, within Synpcc7942_0081 at 79.198 kb on + strand at 79.198 kb on + strand at 79.200 kb on - strand at 79.224 kb on + strand at 79.224 kb on + strand at 79.239 kb on + strand at 79.242 kb on - strand at 79.270 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Flask growth in 60 uE Light-Dark 8:16 remove 78,019 + Synpcc7942_0080 0.30 -0.5 78,019 + Synpcc7942_0080 0.30 -0.7 78,019 + Synpcc7942_0080 0.30 +0.2 78,027 - Synpcc7942_0080 0.31 +0.5 78,027 - Synpcc7942_0080 0.31 +0.4 78,033 - Synpcc7942_0080 0.31 +0.0 78,039 - Synpcc7942_0080 0.32 -0.9 78,047 + Synpcc7942_0080 0.33 +0.7 78,047 + Synpcc7942_0080 0.33 -0.5 78,075 + Synpcc7942_0080 0.35 +0.8 78,151 + -0.2 78,151 + Synpcc7942_0080 0.41 +0.1 78,159 - Synpcc7942_0080 0.42 +0.7 78,159 - Synpcc7942_0080 0.42 +0.0 78,184 + Synpcc7942_0080 0.44 +0.3 78,192 - Synpcc7942_0080 0.44 -0.0 78,194 + Synpcc7942_0080 0.45 -0.1 78,194 + +0.9 78,204 - Synpcc7942_0080 0.45 -0.1 78,204 - Synpcc7942_0080 0.45 +0.0 78,210 + Synpcc7942_0080 0.46 -0.3 78,211 - Synpcc7942_0080 0.46 +0.4 78,245 + Synpcc7942_0080 0.49 +0.0 78,253 - Synpcc7942_0080 0.49 +0.1 78,255 + Synpcc7942_0080 0.50 +0.1 78,260 - Synpcc7942_0080 0.50 +0.0 78,301 - Synpcc7942_0080 0.53 -0.1 78,312 - Synpcc7942_0080 0.54 -0.8 78,318 - Synpcc7942_0080 0.55 -0.9 78,333 + Synpcc7942_0080 0.56 +0.5 78,398 + Synpcc7942_0080 0.61 +0.3 78,398 + Synpcc7942_0080 0.61 +0.5 78,463 + Synpcc7942_0080 0.67 +0.5 78,471 - Synpcc7942_0080 0.67 -0.9 78,471 - Synpcc7942_0080 0.67 -2.5 78,471 - Synpcc7942_0080 0.67 -0.3 78,496 - Synpcc7942_0080 0.69 -0.2 78,506 + Synpcc7942_0080 0.70 +1.0 78,506 + Synpcc7942_0080 0.70 +0.1 78,516 - Synpcc7942_0080 0.71 +2.1 78,536 - Synpcc7942_0080 0.73 +0.2 78,552 + Synpcc7942_0080 0.74 -0.3 78,567 - Synpcc7942_0080 0.75 -0.0 78,582 + Synpcc7942_0080 0.76 +1.2 78,658 + Synpcc7942_0080 0.83 +0.6 78,664 + Synpcc7942_0080 0.83 -0.4 78,694 + Synpcc7942_0080 0.85 +0.9 78,712 + Synpcc7942_0080 0.87 +0.4 78,727 + Synpcc7942_0080 0.88 -0.3 78,739 + Synpcc7942_0080 0.89 +0.2 78,739 + Synpcc7942_0080 0.89 +0.1 78,739 + Synpcc7942_0080 0.89 +0.0 78,747 - Synpcc7942_0080 0.90 +0.1 78,747 - Synpcc7942_0080 0.90 +0.1 78,759 - +1.0 78,760 + -0.7 78,768 - +0.3 78,773 + -0.2 78,802 - -0.5 78,802 - +0.8 78,819 - +0.4 78,847 + +0.1 78,867 - +2.0 78,877 - -0.2 78,881 - +0.8 78,912 + -0.3 78,931 + -0.3 78,936 + +0.4 78,939 - +0.0 78,939 - +1.4 78,944 - -0.6 78,947 + +0.2 78,953 + -0.3 78,956 - +0.4 78,961 - +1.1 78,961 - +0.3 78,961 - +0.3 78,961 - +0.8 78,992 - +0.3 78,993 - +0.1 78,998 - -0.1 79,009 + Synpcc7942_0081 0.10 +0.3 79,009 + Synpcc7942_0081 0.10 -0.6 79,042 + Synpcc7942_0081 0.26 -1.1 79,069 + Synpcc7942_0081 0.39 +0.3 79,080 + Synpcc7942_0081 0.44 -1.7 79,114 + Synpcc7942_0081 0.60 -0.0 79,198 + -1.2 79,198 + +0.1 79,200 - -1.7 79,224 + +0.9 79,224 + -0.3 79,239 + -0.3 79,242 - +0.4 79,270 - -0.3
Or see this region's nucleotide sequence