Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1963

Experiment: D-Sorbitol (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1961 and Pf6N2E2_1962 are separated by 10 nucleotidesPf6N2E2_1962 and Pf6N2E2_1963 are separated by 143 nucleotidesPf6N2E2_1963 and Pf6N2E2_1964 are separated by 244 nucleotides Pf6N2E2_1961 - ABC transporter for D-sorbitol, permease component 2 (from data), at 2,325,953 to 2,326,786 _1961 Pf6N2E2_1962 - ABC transporter for D-sorbitol, permease component 1 (from data), at 2,326,797 to 2,327,639 _1962 Pf6N2E2_1963 - ABC transporter for D-sorbitol, periplasmic substrate-binding component (from data), at 2,327,783 to 2,329,093 _1963 Pf6N2E2_1964 - Transcriptional regulator of various polyols utilization, AraC family, at 2,329,338 to 2,330,336 _1964 Position (kb) 2327 2328 2329 2330Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2326.927 kb on + strand, within Pf6N2E2_1962at 2327.337 kb on - strand, within Pf6N2E2_1962at 2327.708 kb on + strandat 2327.727 kb on + strandat 2327.732 kb on - strandat 2327.773 kb on - strandat 2327.784 kb on + strandat 2327.785 kb on - strandat 2327.897 kb on + strandat 2327.937 kb on + strand, within Pf6N2E2_1963at 2327.938 kb on - strand, within Pf6N2E2_1963at 2327.953 kb on - strand, within Pf6N2E2_1963at 2328.011 kb on + strand, within Pf6N2E2_1963at 2328.040 kb on - strand, within Pf6N2E2_1963at 2328.051 kb on + strand, within Pf6N2E2_1963at 2328.104 kb on - strand, within Pf6N2E2_1963at 2328.107 kb on + strand, within Pf6N2E2_1963at 2328.108 kb on - strand, within Pf6N2E2_1963at 2328.108 kb on - strand, within Pf6N2E2_1963at 2328.108 kb on - strand, within Pf6N2E2_1963at 2328.108 kb on - strand, within Pf6N2E2_1963at 2328.108 kb on - strand, within Pf6N2E2_1963at 2328.117 kb on + strand, within Pf6N2E2_1963at 2328.118 kb on - strand, within Pf6N2E2_1963at 2328.201 kb on + strand, within Pf6N2E2_1963at 2328.202 kb on - strand, within Pf6N2E2_1963at 2328.254 kb on + strand, within Pf6N2E2_1963at 2328.381 kb on - strand, within Pf6N2E2_1963at 2328.410 kb on - strand, within Pf6N2E2_1963at 2328.410 kb on - strand, within Pf6N2E2_1963at 2328.418 kb on - strand, within Pf6N2E2_1963at 2328.512 kb on - strand, within Pf6N2E2_1963at 2328.675 kb on + strand, within Pf6N2E2_1963at 2328.675 kb on + strand, within Pf6N2E2_1963at 2328.676 kb on - strand, within Pf6N2E2_1963at 2328.676 kb on - strand, within Pf6N2E2_1963at 2328.697 kb on - strand, within Pf6N2E2_1963at 2328.711 kb on + strand, within Pf6N2E2_1963at 2328.711 kb on + strand, within Pf6N2E2_1963at 2328.718 kb on + strand, within Pf6N2E2_1963at 2328.812 kb on - strand, within Pf6N2E2_1963at 2328.835 kb on - strand, within Pf6N2E2_1963at 2328.835 kb on - strand, within Pf6N2E2_1963at 2328.921 kb on - strand, within Pf6N2E2_1963at 2329.063 kb on + strandat 2329.127 kb on + strandat 2329.128 kb on - strandat 2329.128 kb on - strandat 2329.130 kb on + strandat 2329.193 kb on + strandat 2329.194 kb on - strandat 2329.304 kb on + strandat 2329.304 kb on + strandat 2329.305 kb on - strandat 2329.338 kb on - strandat 2329.338 kb on - strandat 2329.364 kb on + strandat 2329.368 kb on + strandat 2329.370 kb on + strandat 2329.370 kb on + strandat 2329.371 kb on - strandat 2329.371 kb on - strandat 2329.371 kb on - strandat 2329.473 kb on + strand, within Pf6N2E2_1964at 2329.524 kb on + strand, within Pf6N2E2_1964at 2329.525 kb on - strand, within Pf6N2E2_1964at 2329.647 kb on - strand, within Pf6N2E2_1964at 2329.730 kb on - strand, within Pf6N2E2_1964at 2329.738 kb on + strand, within Pf6N2E2_1964at 2329.739 kb on - strand, within Pf6N2E2_1964at 2329.756 kb on + strand, within Pf6N2E2_1964at 2329.880 kb on - strand, within Pf6N2E2_1964at 2329.974 kb on - strand, within Pf6N2E2_1964at 2329.974 kb on - strand, within Pf6N2E2_1964at 2329.974 kb on - strand, within Pf6N2E2_1964at 2329.989 kb on + strand, within Pf6N2E2_1964at 2329.989 kb on + strand, within Pf6N2E2_1964

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
remove
2,326,927 + Pf6N2E2_1962 0.15 -4.3
2,327,337 - Pf6N2E2_1962 0.64 -2.5
2,327,708 + -4.7
2,327,727 + -3.9
2,327,732 - -2.3
2,327,773 - -3.3
2,327,784 + -3.5
2,327,785 - -2.9
2,327,897 + -2.1
2,327,937 + Pf6N2E2_1963 0.12 -3.9
2,327,938 - Pf6N2E2_1963 0.12 -2.4
2,327,953 - Pf6N2E2_1963 0.13 -4.6
2,328,011 + Pf6N2E2_1963 0.17 -3.2
2,328,040 - Pf6N2E2_1963 0.20 -3.7
2,328,051 + Pf6N2E2_1963 0.20 -3.7
2,328,104 - Pf6N2E2_1963 0.24 -3.3
2,328,107 + Pf6N2E2_1963 0.25 -2.7
2,328,108 - Pf6N2E2_1963 0.25 -1.8
2,328,108 - Pf6N2E2_1963 0.25 -1.7
2,328,108 - Pf6N2E2_1963 0.25 -3.7
2,328,108 - Pf6N2E2_1963 0.25 -3.6
2,328,108 - Pf6N2E2_1963 0.25 -2.9
2,328,117 + Pf6N2E2_1963 0.25 -3.4
2,328,118 - Pf6N2E2_1963 0.26 -3.5
2,328,201 + Pf6N2E2_1963 0.32 -2.1
2,328,202 - Pf6N2E2_1963 0.32 -4.2
2,328,254 + Pf6N2E2_1963 0.36 -4.1
2,328,381 - Pf6N2E2_1963 0.46 -3.9
2,328,410 - Pf6N2E2_1963 0.48 -2.3
2,328,410 - Pf6N2E2_1963 0.48 -3.1
2,328,418 - Pf6N2E2_1963 0.48 -1.5
2,328,512 - Pf6N2E2_1963 0.56 -2.8
2,328,675 + Pf6N2E2_1963 0.68 -2.7
2,328,675 + Pf6N2E2_1963 0.68 -2.3
2,328,676 - Pf6N2E2_1963 0.68 -3.8
2,328,676 - Pf6N2E2_1963 0.68 -4.3
2,328,697 - Pf6N2E2_1963 0.70 -3.3
2,328,711 + Pf6N2E2_1963 0.71 -3.9
2,328,711 + Pf6N2E2_1963 0.71 -3.7
2,328,718 + Pf6N2E2_1963 0.71 -4.3
2,328,812 - Pf6N2E2_1963 0.78 -0.2
2,328,835 - Pf6N2E2_1963 0.80 -3.5
2,328,835 - Pf6N2E2_1963 0.80 -4.7
2,328,921 - Pf6N2E2_1963 0.87 -4.1
2,329,063 + -2.5
2,329,127 + -4.7
2,329,128 - -4.6
2,329,128 - -0.8
2,329,130 + +0.5
2,329,193 + -2.6
2,329,194 - -2.5
2,329,304 + -1.5
2,329,304 + -0.5
2,329,305 - -0.4
2,329,338 - +0.9
2,329,338 - -2.1
2,329,364 + +1.2
2,329,368 + +0.1
2,329,370 + +1.4
2,329,370 + -2.7
2,329,371 - -0.1
2,329,371 - +0.3
2,329,371 - -0.4
2,329,473 + Pf6N2E2_1964 0.14 -0.2
2,329,524 + Pf6N2E2_1964 0.19 -0.4
2,329,525 - Pf6N2E2_1964 0.19 -0.6
2,329,647 - Pf6N2E2_1964 0.31 +0.5
2,329,730 - Pf6N2E2_1964 0.39 +0.9
2,329,738 + Pf6N2E2_1964 0.40 +0.0
2,329,739 - Pf6N2E2_1964 0.40 +0.3
2,329,756 + Pf6N2E2_1964 0.42 -0.8
2,329,880 - Pf6N2E2_1964 0.54 -0.8
2,329,974 - Pf6N2E2_1964 0.64 -3.8
2,329,974 - Pf6N2E2_1964 0.64 -2.7
2,329,974 - Pf6N2E2_1964 0.64 -1.9
2,329,989 + Pf6N2E2_1964 0.65 -2.1
2,329,989 + Pf6N2E2_1964 0.65 -2.2

Or see this region's nucleotide sequence