Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1960 and Pf6N2E2_1961 are separated by 57 nucleotides Pf6N2E2_1961 and Pf6N2E2_1962 are separated by 10 nucleotides Pf6N2E2_1962 and Pf6N2E2_1963 are separated by 143 nucleotides
Pf6N2E2_1960 - ABC transporter for D-sorbitol, ATPase component (from data) , at 2,324,798 to 2,325,895
_1960
Pf6N2E2_1961 - ABC transporter for D-sorbitol, permease component 2 (from data) , at 2,325,953 to 2,326,786
_1961
Pf6N2E2_1962 - ABC transporter for D-sorbitol, permease component 1 (from data) , at 2,326,797 to 2,327,639
_1962
Pf6N2E2_1963 - ABC transporter for D-sorbitol, periplasmic substrate-binding component (from data) , at 2,327,783 to 2,329,093
_1963
Position (kb)
2325
2326
2327 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2325.232 kb on - strand, within Pf6N2E2_1960 at 2325.232 kb on - strand, within Pf6N2E2_1960 at 2325.330 kb on + strand, within Pf6N2E2_1960 at 2325.331 kb on - strand, within Pf6N2E2_1960 at 2325.331 kb on - strand, within Pf6N2E2_1960 at 2325.355 kb on + strand, within Pf6N2E2_1960 at 2325.387 kb on - strand, within Pf6N2E2_1960 at 2325.502 kb on + strand, within Pf6N2E2_1960 at 2325.502 kb on + strand, within Pf6N2E2_1960 at 2325.503 kb on - strand, within Pf6N2E2_1960 at 2325.645 kb on + strand, within Pf6N2E2_1960 at 2325.645 kb on + strand, within Pf6N2E2_1960 at 2325.645 kb on + strand, within Pf6N2E2_1960 at 2325.646 kb on - strand, within Pf6N2E2_1960 at 2325.646 kb on - strand, within Pf6N2E2_1960 at 2325.646 kb on - strand, within Pf6N2E2_1960 at 2325.900 kb on - strand at 2326.021 kb on + strand at 2326.021 kb on + strand at 2326.021 kb on + strand at 2326.022 kb on - strand at 2326.022 kb on - strand at 2326.022 kb on - strand at 2326.299 kb on + strand, within Pf6N2E2_1961 at 2326.306 kb on - strand, within Pf6N2E2_1961 at 2326.345 kb on - strand, within Pf6N2E2_1961 at 2326.345 kb on - strand, within Pf6N2E2_1961 at 2326.345 kb on - strand, within Pf6N2E2_1961 at 2326.401 kb on + strand, within Pf6N2E2_1961 at 2326.401 kb on + strand, within Pf6N2E2_1961 at 2326.401 kb on + strand, within Pf6N2E2_1961 at 2326.401 kb on + strand, within Pf6N2E2_1961 at 2326.401 kb on + strand, within Pf6N2E2_1961 at 2326.401 kb on + strand, within Pf6N2E2_1961 at 2326.405 kb on + strand, within Pf6N2E2_1961 at 2326.406 kb on - strand, within Pf6N2E2_1961 at 2326.406 kb on - strand, within Pf6N2E2_1961 at 2326.581 kb on + strand, within Pf6N2E2_1961 at 2326.582 kb on - strand, within Pf6N2E2_1961 at 2326.608 kb on + strand, within Pf6N2E2_1961 at 2326.609 kb on - strand, within Pf6N2E2_1961 at 2326.622 kb on - strand, within Pf6N2E2_1961 at 2326.748 kb on + strand at 2326.774 kb on + strand at 2326.774 kb on + strand at 2326.927 kb on + strand, within Pf6N2E2_1962 at 2327.337 kb on - strand, within Pf6N2E2_1962 at 2327.708 kb on + strand at 2327.727 kb on + strand at 2327.732 kb on - strand at 2327.773 kb on - strand at 2327.784 kb on + strand at 2327.785 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 2,325,232 - Pf6N2E2_1960 0.40 -1.8 2,325,232 - Pf6N2E2_1960 0.40 -2.1 2,325,330 + Pf6N2E2_1960 0.48 +0.0 2,325,331 - Pf6N2E2_1960 0.49 -4.1 2,325,331 - Pf6N2E2_1960 0.49 -2.7 2,325,355 + Pf6N2E2_1960 0.51 -3.7 2,325,387 - Pf6N2E2_1960 0.54 -2.4 2,325,502 + Pf6N2E2_1960 0.64 -2.5 2,325,502 + Pf6N2E2_1960 0.64 -1.2 2,325,503 - Pf6N2E2_1960 0.64 -4.3 2,325,645 + Pf6N2E2_1960 0.77 -3.8 2,325,645 + Pf6N2E2_1960 0.77 -3.8 2,325,645 + Pf6N2E2_1960 0.77 -4.0 2,325,646 - Pf6N2E2_1960 0.77 -4.4 2,325,646 - Pf6N2E2_1960 0.77 -3.1 2,325,646 - Pf6N2E2_1960 0.77 -4.1 2,325,900 - -2.9 2,326,021 + -1.5 2,326,021 + -4.8 2,326,021 + -3.6 2,326,022 - -0.9 2,326,022 - -3.7 2,326,022 - -3.9 2,326,299 + Pf6N2E2_1961 0.41 -3.1 2,326,306 - Pf6N2E2_1961 0.42 -4.1 2,326,345 - Pf6N2E2_1961 0.47 -4.7 2,326,345 - Pf6N2E2_1961 0.47 -3.1 2,326,345 - Pf6N2E2_1961 0.47 -3.6 2,326,401 + Pf6N2E2_1961 0.54 -4.7 2,326,401 + Pf6N2E2_1961 0.54 -3.6 2,326,401 + Pf6N2E2_1961 0.54 -2.8 2,326,401 + Pf6N2E2_1961 0.54 -2.1 2,326,401 + Pf6N2E2_1961 0.54 -3.9 2,326,401 + Pf6N2E2_1961 0.54 -2.3 2,326,405 + Pf6N2E2_1961 0.54 -1.8 2,326,406 - Pf6N2E2_1961 0.54 -3.5 2,326,406 - Pf6N2E2_1961 0.54 -3.9 2,326,581 + Pf6N2E2_1961 0.75 -2.5 2,326,582 - Pf6N2E2_1961 0.75 -3.8 2,326,608 + Pf6N2E2_1961 0.79 -2.9 2,326,609 - Pf6N2E2_1961 0.79 -3.4 2,326,622 - Pf6N2E2_1961 0.80 -2.6 2,326,748 + -4.1 2,326,774 + -4.4 2,326,774 + -3.9 2,326,927 + Pf6N2E2_1962 0.15 -4.3 2,327,337 - Pf6N2E2_1962 0.64 -2.5 2,327,708 + -4.7 2,327,727 + -3.9 2,327,732 - -2.3 2,327,773 - -3.3 2,327,784 + -3.5 2,327,785 - -2.9
Or see this region's nucleotide sequence