Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1961

Experiment: D-Sorbitol (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1960 and Pf6N2E2_1961 are separated by 57 nucleotidesPf6N2E2_1961 and Pf6N2E2_1962 are separated by 10 nucleotidesPf6N2E2_1962 and Pf6N2E2_1963 are separated by 143 nucleotides Pf6N2E2_1960 - ABC transporter for D-sorbitol, ATPase component (from data), at 2,324,798 to 2,325,895 _1960 Pf6N2E2_1961 - ABC transporter for D-sorbitol, permease component 2 (from data), at 2,325,953 to 2,326,786 _1961 Pf6N2E2_1962 - ABC transporter for D-sorbitol, permease component 1 (from data), at 2,326,797 to 2,327,639 _1962 Pf6N2E2_1963 - ABC transporter for D-sorbitol, periplasmic substrate-binding component (from data), at 2,327,783 to 2,329,093 _1963 Position (kb) 2325 2326 2327Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2325.232 kb on - strand, within Pf6N2E2_1960at 2325.232 kb on - strand, within Pf6N2E2_1960at 2325.330 kb on + strand, within Pf6N2E2_1960at 2325.331 kb on - strand, within Pf6N2E2_1960at 2325.331 kb on - strand, within Pf6N2E2_1960at 2325.355 kb on + strand, within Pf6N2E2_1960at 2325.387 kb on - strand, within Pf6N2E2_1960at 2325.502 kb on + strand, within Pf6N2E2_1960at 2325.502 kb on + strand, within Pf6N2E2_1960at 2325.503 kb on - strand, within Pf6N2E2_1960at 2325.645 kb on + strand, within Pf6N2E2_1960at 2325.645 kb on + strand, within Pf6N2E2_1960at 2325.645 kb on + strand, within Pf6N2E2_1960at 2325.646 kb on - strand, within Pf6N2E2_1960at 2325.646 kb on - strand, within Pf6N2E2_1960at 2325.646 kb on - strand, within Pf6N2E2_1960at 2325.900 kb on - strandat 2326.021 kb on + strandat 2326.021 kb on + strandat 2326.021 kb on + strandat 2326.022 kb on - strandat 2326.022 kb on - strandat 2326.022 kb on - strandat 2326.299 kb on + strand, within Pf6N2E2_1961at 2326.306 kb on - strand, within Pf6N2E2_1961at 2326.345 kb on - strand, within Pf6N2E2_1961at 2326.345 kb on - strand, within Pf6N2E2_1961at 2326.345 kb on - strand, within Pf6N2E2_1961at 2326.401 kb on + strand, within Pf6N2E2_1961at 2326.401 kb on + strand, within Pf6N2E2_1961at 2326.401 kb on + strand, within Pf6N2E2_1961at 2326.401 kb on + strand, within Pf6N2E2_1961at 2326.401 kb on + strand, within Pf6N2E2_1961at 2326.401 kb on + strand, within Pf6N2E2_1961at 2326.405 kb on + strand, within Pf6N2E2_1961at 2326.406 kb on - strand, within Pf6N2E2_1961at 2326.406 kb on - strand, within Pf6N2E2_1961at 2326.581 kb on + strand, within Pf6N2E2_1961at 2326.582 kb on - strand, within Pf6N2E2_1961at 2326.608 kb on + strand, within Pf6N2E2_1961at 2326.609 kb on - strand, within Pf6N2E2_1961at 2326.622 kb on - strand, within Pf6N2E2_1961at 2326.748 kb on + strandat 2326.774 kb on + strandat 2326.774 kb on + strandat 2326.927 kb on + strand, within Pf6N2E2_1962at 2327.337 kb on - strand, within Pf6N2E2_1962at 2327.708 kb on + strandat 2327.727 kb on + strandat 2327.732 kb on - strandat 2327.773 kb on - strandat 2327.784 kb on + strandat 2327.785 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Sorbitol (C)
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2,325,232 - Pf6N2E2_1960 0.40 -1.8
2,325,232 - Pf6N2E2_1960 0.40 -2.1
2,325,330 + Pf6N2E2_1960 0.48 +0.0
2,325,331 - Pf6N2E2_1960 0.49 -4.1
2,325,331 - Pf6N2E2_1960 0.49 -2.7
2,325,355 + Pf6N2E2_1960 0.51 -3.7
2,325,387 - Pf6N2E2_1960 0.54 -2.4
2,325,502 + Pf6N2E2_1960 0.64 -2.5
2,325,502 + Pf6N2E2_1960 0.64 -1.2
2,325,503 - Pf6N2E2_1960 0.64 -4.3
2,325,645 + Pf6N2E2_1960 0.77 -3.8
2,325,645 + Pf6N2E2_1960 0.77 -3.8
2,325,645 + Pf6N2E2_1960 0.77 -4.0
2,325,646 - Pf6N2E2_1960 0.77 -4.4
2,325,646 - Pf6N2E2_1960 0.77 -3.1
2,325,646 - Pf6N2E2_1960 0.77 -4.1
2,325,900 - -2.9
2,326,021 + -1.5
2,326,021 + -4.8
2,326,021 + -3.6
2,326,022 - -0.9
2,326,022 - -3.7
2,326,022 - -3.9
2,326,299 + Pf6N2E2_1961 0.41 -3.1
2,326,306 - Pf6N2E2_1961 0.42 -4.1
2,326,345 - Pf6N2E2_1961 0.47 -4.7
2,326,345 - Pf6N2E2_1961 0.47 -3.1
2,326,345 - Pf6N2E2_1961 0.47 -3.6
2,326,401 + Pf6N2E2_1961 0.54 -4.7
2,326,401 + Pf6N2E2_1961 0.54 -3.6
2,326,401 + Pf6N2E2_1961 0.54 -2.8
2,326,401 + Pf6N2E2_1961 0.54 -2.1
2,326,401 + Pf6N2E2_1961 0.54 -3.9
2,326,401 + Pf6N2E2_1961 0.54 -2.3
2,326,405 + Pf6N2E2_1961 0.54 -1.8
2,326,406 - Pf6N2E2_1961 0.54 -3.5
2,326,406 - Pf6N2E2_1961 0.54 -3.9
2,326,581 + Pf6N2E2_1961 0.75 -2.5
2,326,582 - Pf6N2E2_1961 0.75 -3.8
2,326,608 + Pf6N2E2_1961 0.79 -2.9
2,326,609 - Pf6N2E2_1961 0.79 -3.4
2,326,622 - Pf6N2E2_1961 0.80 -2.6
2,326,748 + -4.1
2,326,774 + -4.4
2,326,774 + -3.9
2,326,927 + Pf6N2E2_1962 0.15 -4.3
2,327,337 - Pf6N2E2_1962 0.64 -2.5
2,327,708 + -4.7
2,327,727 + -3.9
2,327,732 - -2.3
2,327,773 - -3.3
2,327,784 + -3.5
2,327,785 - -2.9

Or see this region's nucleotide sequence