Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS13105

Experiment: CDM1 without Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBBR_RS13100 and BBR_RS13105 are separated by 162 nucleotidesBBR_RS13105 and BBR_RS13110 are separated by 93 nucleotidesBBR_RS13110 and BBR_RS13115 are separated by 126 nucleotides BBR_RS13100: BBR_RS13100 - sugar ABC transporter substrate-binding protein, at 713,528 to 714,874 _RS13100 BBR_RS13105: BBR_RS13105 - sugar ABC transporter substrate-binding protein, at 715,037 to 716,458 _RS13105 BBR_RS13110: BBR_RS13110 - type III pantothenate kinase, at 716,552 to 717,322 _RS13110 BBR_RS13115: BBR_RS13115 - Solute-binding protein of ABC transporter system for peptide, at 717,449 to 719,083 _RS13115 Position (kb) 715 716 717Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 714.060 kb on - strand, within BBR_RS13100at 714.060 kb on - strand, within BBR_RS13100at 714.112 kb on - strand, within BBR_RS13100at 714.167 kb on + strand, within BBR_RS13100at 714.186 kb on + strand, within BBR_RS13100at 714.186 kb on + strand, within BBR_RS13100at 714.206 kb on - strand, within BBR_RS13100at 714.232 kb on - strand, within BBR_RS13100at 714.242 kb on - strand, within BBR_RS13100at 714.267 kb on - strand, within BBR_RS13100at 714.343 kb on + strand, within BBR_RS13100at 714.351 kb on - strand, within BBR_RS13100at 714.363 kb on + strand, within BBR_RS13100at 714.454 kb on + strand, within BBR_RS13100at 714.481 kb on - strand, within BBR_RS13100at 714.504 kb on + strand, within BBR_RS13100at 714.504 kb on - strand, within BBR_RS13100at 714.542 kb on + strand, within BBR_RS13100at 714.555 kb on - strand, within BBR_RS13100at 714.555 kb on - strand, within BBR_RS13100at 714.616 kb on + strand, within BBR_RS13100at 714.624 kb on - strand, within BBR_RS13100at 714.624 kb on - strand, within BBR_RS13100at 714.624 kb on - strand, within BBR_RS13100at 714.641 kb on + strand, within BBR_RS13100at 714.641 kb on + strand, within BBR_RS13100at 714.655 kb on + strand, within BBR_RS13100at 714.688 kb on + strand, within BBR_RS13100at 714.706 kb on - strand, within BBR_RS13100at 714.725 kb on + strand, within BBR_RS13100at 714.748 kb on - strandat 714.748 kb on - strandat 714.748 kb on - strandat 714.748 kb on - strandat 714.768 kb on + strandat 714.778 kb on + strandat 714.778 kb on + strandat 714.778 kb on + strandat 714.778 kb on + strandat 714.786 kb on - strandat 714.786 kb on - strandat 714.786 kb on - strandat 714.786 kb on - strandat 714.786 kb on - strandat 714.786 kb on - strandat 714.786 kb on - strandat 714.851 kb on + strandat 714.859 kb on - strandat 714.859 kb on - strandat 714.869 kb on + strandat 714.911 kb on - strandat 714.956 kb on - strandat 714.957 kb on + strandat 714.975 kb on + strandat 714.981 kb on + strandat 715.021 kb on + strandat 716.474 kb on - strandat 716.527 kb on - strandat 716.527 kb on - strandat 716.604 kb on + strandat 716.639 kb on - strand, within BBR_RS13110at 716.670 kb on + strand, within BBR_RS13110at 716.671 kb on + strand, within BBR_RS13110at 716.737 kb on - strand, within BBR_RS13110at 716.737 kb on - strand, within BBR_RS13110at 716.739 kb on + strand, within BBR_RS13110at 716.739 kb on + strand, within BBR_RS13110at 716.739 kb on + strand, within BBR_RS13110at 716.747 kb on - strand, within BBR_RS13110at 716.765 kb on + strand, within BBR_RS13110at 716.842 kb on + strand, within BBR_RS13110at 716.901 kb on - strand, within BBR_RS13110at 716.903 kb on - strand, within BBR_RS13110at 716.970 kb on - strand, within BBR_RS13110at 717.031 kb on + strand, within BBR_RS13110at 717.039 kb on - strand, within BBR_RS13110at 717.039 kb on - strand, within BBR_RS13110at 717.099 kb on - strand, within BBR_RS13110at 717.117 kb on + strand, within BBR_RS13110at 717.117 kb on + strand, within BBR_RS13110at 717.117 kb on + strand, within BBR_RS13110at 717.118 kb on - strand, within BBR_RS13110at 717.125 kb on - strand, within BBR_RS13110at 717.126 kb on - strand, within BBR_RS13110at 717.135 kb on - strand, within BBR_RS13110at 717.163 kb on + strand, within BBR_RS13110at 717.171 kb on - strand, within BBR_RS13110at 717.216 kb on + strand, within BBR_RS13110at 717.218 kb on + strand, within BBR_RS13110at 717.388 kb on + strandat 717.391 kb on - strandat 717.391 kb on - strandat 717.396 kb on - strandat 717.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction CDM1 without Methionine
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714,060 - BBR_RS13100 0.39 +0.1
714,060 - BBR_RS13100 0.39 -0.8
714,112 - BBR_RS13100 0.43 -0.7
714,167 + BBR_RS13100 0.47 +0.7
714,186 + BBR_RS13100 0.49 +0.3
714,186 + BBR_RS13100 0.49 +0.5
714,206 - BBR_RS13100 0.50 +0.2
714,232 - BBR_RS13100 0.52 +0.5
714,242 - BBR_RS13100 0.53 -0.7
714,267 - BBR_RS13100 0.55 +0.9
714,343 + BBR_RS13100 0.61 +0.5
714,351 - BBR_RS13100 0.61 +0.5
714,363 + BBR_RS13100 0.62 -1.4
714,454 + BBR_RS13100 0.69 -0.0
714,481 - BBR_RS13100 0.71 +0.4
714,504 + BBR_RS13100 0.72 +0.8
714,504 - BBR_RS13100 0.72 -1.9
714,542 + BBR_RS13100 0.75 -1.1
714,555 - BBR_RS13100 0.76 -0.7
714,555 - BBR_RS13100 0.76 +0.6
714,616 + BBR_RS13100 0.81 +0.1
714,624 - BBR_RS13100 0.81 +0.2
714,624 - BBR_RS13100 0.81 +1.3
714,624 - BBR_RS13100 0.81 +1.0
714,641 + BBR_RS13100 0.83 +0.7
714,641 + BBR_RS13100 0.83 +0.7
714,655 + BBR_RS13100 0.84 +0.6
714,688 + BBR_RS13100 0.86 +0.9
714,706 - BBR_RS13100 0.87 -0.9
714,725 + BBR_RS13100 0.89 +0.3
714,748 - +0.6
714,748 - -1.4
714,748 - -0.2
714,748 - -0.1
714,768 + +0.8
714,778 + +0.5
714,778 + +1.1
714,778 + -3.6
714,778 + +0.7
714,786 - +2.0
714,786 - -0.2
714,786 - -1.4
714,786 - +0.0
714,786 - -0.2
714,786 - +0.3
714,786 - +1.0
714,851 + +1.4
714,859 - -0.4
714,859 - -0.2
714,869 + -1.0
714,911 - -0.7
714,956 - +1.0
714,957 + -0.1
714,975 + +0.5
714,981 + +0.1
715,021 + +2.4
716,474 - -0.7
716,527 - -0.8
716,527 - -0.4
716,604 + +2.0
716,639 - BBR_RS13110 0.11 +0.7
716,670 + BBR_RS13110 0.15 +1.2
716,671 + BBR_RS13110 0.15 +1.8
716,737 - BBR_RS13110 0.24 +0.7
716,737 - BBR_RS13110 0.24 +1.1
716,739 + BBR_RS13110 0.24 +2.1
716,739 + BBR_RS13110 0.24 +1.7
716,739 + BBR_RS13110 0.24 +2.0
716,747 - BBR_RS13110 0.25 +1.1
716,765 + BBR_RS13110 0.28 +1.4
716,842 + BBR_RS13110 0.38 +2.0
716,901 - BBR_RS13110 0.45 +1.2
716,903 - BBR_RS13110 0.46 +0.7
716,970 - BBR_RS13110 0.54 +1.2
717,031 + BBR_RS13110 0.62 +2.2
717,039 - BBR_RS13110 0.63 +1.2
717,039 - BBR_RS13110 0.63 +1.0
717,099 - BBR_RS13110 0.71 +1.6
717,117 + BBR_RS13110 0.73 +2.2
717,117 + BBR_RS13110 0.73 +2.1
717,117 + BBR_RS13110 0.73 +1.3
717,118 - BBR_RS13110 0.73 +1.1
717,125 - BBR_RS13110 0.74 +0.1
717,126 - BBR_RS13110 0.74 +1.6
717,135 - BBR_RS13110 0.76 +1.6
717,163 + BBR_RS13110 0.79 +1.0
717,171 - BBR_RS13110 0.80 +1.2
717,216 + BBR_RS13110 0.86 +2.5
717,218 + BBR_RS13110 0.86 +2.5
717,388 + -0.1
717,391 - -1.6
717,391 - -1.3
717,396 - -0.7
717,396 - -2.5

Or see this region's nucleotide sequence