Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS10645

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS10635 and AZOBR_RS10640 are separated by 92 nucleotidesAZOBR_RS10640 and AZOBR_RS10645 are separated by 38 nucleotides AZOBR_RS10635: AZOBR_RS10635 - hypothetical protein, at 2,233,677 to 2,234,435 _RS10635 AZOBR_RS10640: AZOBR_RS10640 - tRNA-Glu, at 2,234,528 to 2,234,603 _RS10640 AZOBR_RS10645: AZOBR_RS10645 - tRNA-Glu, at 2,234,642 to 2,234,717 _RS10645 Position (kb) 2234 2235Strain fitness (log2 ratio) -1 0 1at 2233.714 kb on - strandat 2233.725 kb on + strandat 2233.725 kb on + strandat 2233.725 kb on + strandat 2233.725 kb on + strandat 2233.726 kb on - strandat 2233.726 kb on - strandat 2233.726 kb on - strandat 2233.726 kb on - strandat 2233.905 kb on + strand, within AZOBR_RS10635at 2234.064 kb on + strand, within AZOBR_RS10635at 2234.064 kb on + strand, within AZOBR_RS10635at 2234.064 kb on + strand, within AZOBR_RS10635at 2234.065 kb on - strand, within AZOBR_RS10635at 2234.065 kb on - strand, within AZOBR_RS10635at 2234.065 kb on - strand, within AZOBR_RS10635at 2234.119 kb on - strand, within AZOBR_RS10635at 2234.119 kb on - strand, within AZOBR_RS10635at 2234.328 kb on + strand, within AZOBR_RS10635at 2234.329 kb on - strand, within AZOBR_RS10635at 2234.329 kb on - strand, within AZOBR_RS10635at 2234.329 kb on - strand, within AZOBR_RS10635at 2234.349 kb on + strand, within AZOBR_RS10635at 2234.349 kb on + strand, within AZOBR_RS10635at 2234.582 kb on + strand, within AZOBR_RS10640at 2234.582 kb on + strand, within AZOBR_RS10640at 2234.892 kb on + strandat 2235.374 kb on - strandat 2235.374 kb on - strandat 2235.586 kb on + strandat 2235.599 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,233,714 - +0.7
2,233,725 + -1.0
2,233,725 + -1.4
2,233,725 + +0.5
2,233,725 + +1.0
2,233,726 - -1.0
2,233,726 - -0.6
2,233,726 - +0.0
2,233,726 - +0.4
2,233,905 + AZOBR_RS10635 0.30 +0.1
2,234,064 + AZOBR_RS10635 0.51 +0.8
2,234,064 + AZOBR_RS10635 0.51 +1.1
2,234,064 + AZOBR_RS10635 0.51 +1.4
2,234,065 - AZOBR_RS10635 0.51 -0.1
2,234,065 - AZOBR_RS10635 0.51 +0.4
2,234,065 - AZOBR_RS10635 0.51 -0.0
2,234,119 - AZOBR_RS10635 0.58 +0.3
2,234,119 - AZOBR_RS10635 0.58 +0.2
2,234,328 + AZOBR_RS10635 0.86 +0.0
2,234,329 - AZOBR_RS10635 0.86 -1.7
2,234,329 - AZOBR_RS10635 0.86 -0.3
2,234,329 - AZOBR_RS10635 0.86 -1.1
2,234,349 + AZOBR_RS10635 0.89 +0.3
2,234,349 + AZOBR_RS10635 0.89 -1.3
2,234,582 + AZOBR_RS10640 0.71 -0.0
2,234,582 + AZOBR_RS10640 0.71 -0.7
2,234,892 + +0.1
2,235,374 - -0.2
2,235,374 - +0.2
2,235,586 + -0.0
2,235,599 - -0.2

Or see this region's nucleotide sequence