Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09715

Experiment: L-Serine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09700 and AZOBR_RS09705 are separated by 132 nucleotidesAZOBR_RS09705 and AZOBR_RS09710 are separated by 231 nucleotidesAZOBR_RS09710 and AZOBR_RS09715 are separated by 187 nucleotidesAZOBR_RS09715 and AZOBR_RS09720 are separated by 128 nucleotides AZOBR_RS09700: AZOBR_RS09700 - tRNA-Val, at 2,033,754 to 2,033,828 _RS09700 AZOBR_RS09705: AZOBR_RS09705 - tRNA-Val, at 2,033,961 to 2,034,035 _RS09705 AZOBR_RS09710: AZOBR_RS09710 - sugar tyrosine-protein kinase, at 2,034,267 to 2,034,431 _RS09710 AZOBR_RS09715: AZOBR_RS09715 - pantoate--beta-alanine ligase, at 2,034,619 to 2,035,485 _RS09715 AZOBR_RS09720: AZOBR_RS09720 - succinate-semialdehyde dehdyrogenase, at 2,035,614 to 2,037,107 _RS09720 Position (kb) 2034 2035 2036Strain fitness (log2 ratio) -3 -2 -1 0 1at 2033.633 kb on + strandat 2033.803 kb on - strand, within AZOBR_RS09700at 2033.803 kb on - strand, within AZOBR_RS09700at 2033.816 kb on - strand, within AZOBR_RS09700at 2033.865 kb on + strandat 2034.136 kb on + strandat 2034.200 kb on - strandat 2034.275 kb on + strandat 2034.571 kb on + strandat 2034.571 kb on + strandat 2034.910 kb on + strand, within AZOBR_RS09715at 2034.911 kb on - strand, within AZOBR_RS09715at 2034.934 kb on + strand, within AZOBR_RS09715at 2034.935 kb on - strand, within AZOBR_RS09715at 2035.207 kb on + strand, within AZOBR_RS09715at 2035.208 kb on - strand, within AZOBR_RS09715at 2035.357 kb on + strand, within AZOBR_RS09715at 2035.559 kb on + strandat 2035.559 kb on + strandat 2035.559 kb on + strandat 2035.559 kb on + strandat 2035.560 kb on - strandat 2035.560 kb on - strandat 2035.560 kb on - strandat 2035.560 kb on - strandat 2035.560 kb on - strandat 2035.561 kb on + strandat 2035.561 kb on + strandat 2035.561 kb on + strandat 2035.562 kb on - strandat 2035.562 kb on - strandat 2035.620 kb on + strandat 2035.978 kb on - strand, within AZOBR_RS09720

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Serine (N)
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2,033,633 + +0.7
2,033,803 - AZOBR_RS09700 0.65 -0.4
2,033,803 - AZOBR_RS09700 0.65 -0.3
2,033,816 - AZOBR_RS09700 0.83 +1.6
2,033,865 + +0.5
2,034,136 + +1.1
2,034,200 - +0.0
2,034,275 + -0.4
2,034,571 + +0.2
2,034,571 + -1.0
2,034,910 + AZOBR_RS09715 0.34 -0.9
2,034,911 - AZOBR_RS09715 0.34 +1.1
2,034,934 + AZOBR_RS09715 0.36 -2.2
2,034,935 - AZOBR_RS09715 0.36 -0.1
2,035,207 + AZOBR_RS09715 0.68 +0.7
2,035,208 - AZOBR_RS09715 0.68 +0.3
2,035,357 + AZOBR_RS09715 0.85 +0.0
2,035,559 + +0.3
2,035,559 + -0.4
2,035,559 + -0.0
2,035,559 + +0.4
2,035,560 - -0.2
2,035,560 - -0.1
2,035,560 - -3.1
2,035,560 - +0.3
2,035,560 - +0.6
2,035,561 + +0.7
2,035,561 + +0.2
2,035,561 + -0.5
2,035,562 - +0.0
2,035,562 - -0.5
2,035,620 + +0.5
2,035,978 - AZOBR_RS09720 0.24 -0.1

Or see this region's nucleotide sequence