Experiment: L-Malic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04465 and AO353_04470 are separated by 240 nucleotides AO353_04470 and AO353_04475 are separated by 190 nucleotides AO353_04475 and AO353_04480 are separated by 916 nucleotides
AO353_04465: AO353_04465 - N-acetylglucosamine-specific PTS system, IIBC components (nagE) <small>(from data)</small>, at 960,687 to 962,402
_04465
AO353_04470: AO353_04470 - hypothetical protein, at 962,643 to 962,942
_04470
AO353_04475: AO353_04475 - hypothetical protein, at 963,133 to 963,522
_04475
AO353_04480: AO353_04480 - NGG1p interacting factor NIF3, at 964,439 to 964,750
_04480
Position (kb) 963
964 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 962.163 kb on - strand, within AO353_04465 at 962.244 kb on - strand at 962.565 kb on + strand at 962.565 kb on + strand at 962.565 kb on + strand at 962.565 kb on + strand at 962.565 kb on + strand at 962.565 kb on + strand at 962.566 kb on - strand at 962.566 kb on - strand at 962.644 kb on + strand at 962.644 kb on + strand at 962.644 kb on + strand at 962.644 kb on + strand at 962.644 kb on + strand at 962.645 kb on - strand at 962.645 kb on - strand at 962.645 kb on - strand at 962.645 kb on - strand at 962.648 kb on + strand at 962.648 kb on + strand at 962.648 kb on + strand at 962.649 kb on - strand at 962.675 kb on + strand, within AO353_04470 at 962.676 kb on - strand, within AO353_04470 at 962.676 kb on - strand, within AO353_04470 at 962.676 kb on - strand, within AO353_04470 at 962.699 kb on + strand, within AO353_04470 at 962.700 kb on - strand, within AO353_04470 at 962.700 kb on - strand, within AO353_04470 at 962.700 kb on - strand, within AO353_04470 at 962.789 kb on + strand, within AO353_04470 at 962.789 kb on + strand, within AO353_04470 at 962.789 kb on + strand, within AO353_04470 at 962.789 kb on + strand, within AO353_04470 at 962.789 kb on + strand, within AO353_04470 at 962.790 kb on - strand, within AO353_04470 at 962.790 kb on - strand, within AO353_04470 at 962.790 kb on - strand, within AO353_04470 at 962.790 kb on - strand, within AO353_04470 at 962.790 kb on - strand, within AO353_04470 at 962.790 kb on - strand, within AO353_04470 at 962.790 kb on - strand, within AO353_04470 at 962.790 kb on - strand, within AO353_04470 at 962.800 kb on + strand, within AO353_04470 at 962.800 kb on + strand, within AO353_04470 at 962.800 kb on + strand, within AO353_04470 at 962.800 kb on + strand, within AO353_04470 at 962.800 kb on + strand, within AO353_04470 at 962.801 kb on - strand, within AO353_04470 at 962.801 kb on - strand, within AO353_04470 at 962.801 kb on - strand, within AO353_04470 at 962.801 kb on - strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.831 kb on + strand, within AO353_04470 at 962.832 kb on - strand, within AO353_04470 at 962.832 kb on - strand, within AO353_04470 at 962.832 kb on - strand, within AO353_04470 at 962.832 kb on - strand, within AO353_04470 at 962.832 kb on - strand, within AO353_04470 at 962.832 kb on - strand, within AO353_04470 at 962.841 kb on + strand, within AO353_04470 at 962.841 kb on + strand, within AO353_04470 at 962.841 kb on + strand, within AO353_04470 at 962.841 kb on + strand, within AO353_04470 at 962.841 kb on + strand, within AO353_04470 at 962.842 kb on - strand, within AO353_04470 at 962.844 kb on + strand, within AO353_04470 at 962.844 kb on + strand, within AO353_04470 at 962.844 kb on + strand, within AO353_04470 at 962.844 kb on + strand, within AO353_04470 at 962.844 kb on + strand, within AO353_04470 at 962.844 kb on + strand, within AO353_04470 at 962.844 kb on + strand, within AO353_04470 at 962.845 kb on - strand, within AO353_04470 at 962.845 kb on - strand, within AO353_04470 at 962.845 kb on - strand, within AO353_04470 at 962.845 kb on - strand, within AO353_04470 at 962.845 kb on - strand, within AO353_04470 at 962.906 kb on + strand, within AO353_04470 at 962.906 kb on + strand, within AO353_04470 at 962.906 kb on + strand, within AO353_04470 at 962.907 kb on - strand at 962.907 kb on - strand, within AO353_04470 at 962.907 kb on - strand, within AO353_04470 at 962.980 kb on - strand at 963.007 kb on + strand at 963.007 kb on + strand at 963.007 kb on + strand at 963.007 kb on + strand at 963.008 kb on - strand at 963.008 kb on - strand at 963.015 kb on + strand at 963.015 kb on + strand at 963.015 kb on + strand at 963.015 kb on + strand at 963.015 kb on + strand at 963.015 kb on + strand at 963.015 kb on + strand at 963.015 kb on + strand at 963.016 kb on - strand at 963.016 kb on - strand at 963.016 kb on - strand at 963.016 kb on - strand at 963.016 kb on - strand at 963.016 kb on - strand at 963.016 kb on - strand at 963.016 kb on - strand at 963.016 kb on - strand at 963.016 kb on - strand at 963.026 kb on + strand at 963.026 kb on + strand at 963.026 kb on + strand at 963.026 kb on + strand at 963.027 kb on - strand at 963.027 kb on - strand at 963.027 kb on - strand at 963.027 kb on - strand at 963.072 kb on - strand at 963.072 kb on - strand at 963.123 kb on + strand at 963.123 kb on + strand at 963.123 kb on + strand at 963.124 kb on - strand at 963.126 kb on + strand at 963.127 kb on - strand at 963.127 kb on - strand at 963.127 kb on - strand at 963.127 kb on - strand at 963.127 kb on - strand at 963.134 kb on + strand at 963.134 kb on + strand at 963.134 kb on + strand at 963.135 kb on - strand at 963.135 kb on - strand at 963.147 kb on - strand at 963.147 kb on - strand at 963.147 kb on - strand at 963.147 kb on - strand at 963.147 kb on - strand at 963.173 kb on + strand, within AO353_04475 at 963.173 kb on + strand, within AO353_04475 at 963.173 kb on + strand, within AO353_04475 at 963.173 kb on + strand, within AO353_04475 at 963.173 kb on + strand, within AO353_04475 at 963.173 kb on + strand, within AO353_04475 at 963.174 kb on - strand, within AO353_04475 at 963.174 kb on - strand, within AO353_04475 at 963.416 kb on + strand, within AO353_04475 at 963.534 kb on + strand at 963.534 kb on + strand at 963.535 kb on - strand at 963.535 kb on - strand at 963.535 kb on - strand at 963.535 kb on - strand at 963.540 kb on + strand at 963.540 kb on + strand at 963.540 kb on + strand at 963.540 kb on + strand at 963.540 kb on + strand at 963.540 kb on + strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.541 kb on - strand at 963.551 kb on - strand at 963.551 kb on - strand at 963.551 kb on - strand at 963.585 kb on + strand at 963.585 kb on + strand at 963.585 kb on + strand at 963.586 kb on - strand at 963.586 kb on - strand at 963.586 kb on - strand at 963.586 kb on - strand at 963.586 kb on - strand at 963.586 kb on - strand at 963.611 kb on + strand at 963.612 kb on - strand at 963.612 kb on - strand at 963.654 kb on + strand at 963.654 kb on + strand at 963.654 kb on + strand at 963.655 kb on - strand at 963.655 kb on - strand at 963.687 kb on - strand at 963.687 kb on - strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.688 kb on + strand at 963.689 kb on - strand at 963.689 kb on - strand at 963.689 kb on - strand at 963.689 kb on - strand at 963.689 kb on - strand at 963.689 kb on - strand at 963.689 kb on - strand at 963.689 kb on - strand at 963.689 kb on - strand at 963.689 kb on - strand at 963.700 kb on + strand at 963.700 kb on + strand at 963.700 kb on + strand at 963.700 kb on + strand at 963.700 kb on + strand at 963.700 kb on + strand at 963.701 kb on - strand at 963.701 kb on - strand at 963.701 kb on - strand at 963.701 kb on - strand at 963.701 kb on - strand at 963.701 kb on - strand at 963.701 kb on - strand at 963.701 kb on - strand at 963.701 kb on - strand at 963.701 kb on - strand at 963.709 kb on - strand at 963.709 kb on - strand at 963.717 kb on - strand at 963.717 kb on - strand at 963.858 kb on + strand at 963.858 kb on + strand at 963.858 kb on + strand at 963.858 kb on + strand at 963.858 kb on + strand at 963.859 kb on - strand at 963.867 kb on + strand at 963.867 kb on + strand at 963.867 kb on + strand at 963.867 kb on + strand at 963.868 kb on - strand at 963.868 kb on - strand at 963.897 kb on + strand at 963.897 kb on + strand at 963.898 kb on - strand at 963.898 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.293 kb on - strand at 964.386 kb on + strand at 964.386 kb on + strand at 964.387 kb on - strand at 964.387 kb on - strand at 964.424 kb on + strand at 964.424 kb on + strand at 964.425 kb on - strand at 964.467 kb on + strand at 964.482 kb on + strand at 964.483 kb on - strand, within AO353_04480 at 964.483 kb on - strand, within AO353_04480
Per-strain Table
Position Strand Gene LocusTag Fraction L-Malic (C) remove 962,163 - AO353_04465 0.86 +0.7 962,244 - -2.0 962,565 + +0.7 962,565 + +0.1 962,565 + +0.2 962,565 + -0.8 962,565 + +1.4 962,565 + -0.8 962,566 - -0.6 962,566 - +0.1 962,644 + -0.0 962,644 + +0.1 962,644 + -1.5 962,644 + -2.1 962,644 + +1.0 962,645 - +0.3 962,645 - +0.1 962,645 - -1.9 962,645 - +0.1 962,648 + -0.7 962,648 + -0.1 962,648 + +0.2 962,649 - +1.7 962,675 + AO353_04470 0.11 -0.3 962,676 - AO353_04470 0.11 +0.4 962,676 - AO353_04470 0.11 -0.3 962,676 - AO353_04470 0.11 +1.0 962,699 + AO353_04470 0.19 +0.9 962,700 - AO353_04470 0.19 -0.1 962,700 - AO353_04470 0.19 +0.9 962,700 - AO353_04470 0.19 +0.4 962,789 + AO353_04470 0.49 +0.9 962,789 + AO353_04470 0.49 +1.7 962,789 + AO353_04470 0.49 -1.8 962,789 + AO353_04470 0.49 +0.7 962,789 + AO353_04470 0.49 +0.4 962,790 - AO353_04470 0.49 -0.3 962,790 - AO353_04470 0.49 -0.3 962,790 - AO353_04470 0.49 +0.7 962,790 - AO353_04470 0.49 +1.2 962,790 - AO353_04470 0.49 +0.6 962,790 - AO353_04470 0.49 +0.2 962,790 - AO353_04470 0.49 -1.5 962,790 - AO353_04470 0.49 +0.4 962,800 + AO353_04470 0.52 +0.1 962,800 + AO353_04470 0.52 -0.6 962,800 + AO353_04470 0.52 +0.2 962,800 + AO353_04470 0.52 -0.6 962,800 + AO353_04470 0.52 +0.5 962,801 - AO353_04470 0.53 -0.7 962,801 - AO353_04470 0.53 +0.6 962,801 - AO353_04470 0.53 +0.5 962,801 - AO353_04470 0.53 +0.1 962,831 + AO353_04470 0.63 -0.3 962,831 + AO353_04470 0.63 +3.0 962,831 + AO353_04470 0.63 -1.1 962,831 + AO353_04470 0.63 -0.9 962,831 + AO353_04470 0.63 -0.6 962,831 + AO353_04470 0.63 +0.9 962,831 + AO353_04470 0.63 +0.1 962,831 + AO353_04470 0.63 -1.3 962,831 + AO353_04470 0.63 +0.8 962,831 + AO353_04470 0.63 +1.4 962,831 + AO353_04470 0.63 -1.0 962,831 + AO353_04470 0.63 -1.3 962,831 + AO353_04470 0.63 +0.0 962,832 - AO353_04470 0.63 -0.2 962,832 - AO353_04470 0.63 +0.0 962,832 - AO353_04470 0.63 +0.2 962,832 - AO353_04470 0.63 -0.4 962,832 - AO353_04470 0.63 +0.9 962,832 - AO353_04470 0.63 -1.4 962,841 + AO353_04470 0.66 +0.3 962,841 + AO353_04470 0.66 +0.3 962,841 + AO353_04470 0.66 +0.9 962,841 + AO353_04470 0.66 -1.5 962,841 + AO353_04470 0.66 -0.7 962,842 - AO353_04470 0.66 -1.2 962,844 + AO353_04470 0.67 +0.7 962,844 + AO353_04470 0.67 +1.0 962,844 + AO353_04470 0.67 +0.2 962,844 + AO353_04470 0.67 +0.4 962,844 + AO353_04470 0.67 -0.9 962,844 + AO353_04470 0.67 -0.9 962,844 + AO353_04470 0.67 -1.1 962,845 - AO353_04470 0.67 -1.5 962,845 - AO353_04470 0.67 +0.7 962,845 - AO353_04470 0.67 -0.3 962,845 - AO353_04470 0.67 -1.3 962,845 - AO353_04470 0.67 -0.5 962,906 + AO353_04470 0.88 -1.1 962,906 + AO353_04470 0.88 +0.0 962,906 + AO353_04470 0.88 +1.0 962,907 - +1.7 962,907 - AO353_04470 0.88 +0.1 962,907 - AO353_04470 0.88 +1.0 962,980 - +0.6 963,007 + -0.3 963,007 + -0.0 963,007 + +0.6 963,007 + +0.5 963,008 - +0.1 963,008 - -0.7 963,015 + +0.0 963,015 + +1.7 963,015 + -0.4 963,015 + +1.7 963,015 + +0.8 963,015 + +1.3 963,015 + +1.1 963,015 + -0.7 963,016 - -0.2 963,016 - +0.7 963,016 - +1.4 963,016 - +2.8 963,016 - +1.7 963,016 - -1.2 963,016 - -0.2 963,016 - +0.7 963,016 - +0.7 963,016 - +0.1 963,026 + -1.2 963,026 + +1.4 963,026 + -0.1 963,026 + +1.1 963,027 - -0.3 963,027 - +0.5 963,027 - +0.7 963,027 - +1.0 963,072 - +1.1 963,072 - -0.9 963,123 + -0.5 963,123 + -0.8 963,123 + -0.6 963,124 - +1.6 963,126 + +0.6 963,127 - -0.6 963,127 - -0.7 963,127 - +0.1 963,127 - +0.1 963,127 - +1.4 963,134 + +0.7 963,134 + -0.0 963,134 + -1.1 963,135 - +0.1 963,135 - +0.3 963,147 - +0.4 963,147 - +0.4 963,147 - +0.3 963,147 - +0.6 963,147 - +0.3 963,173 + AO353_04475 0.10 +0.3 963,173 + AO353_04475 0.10 -0.9 963,173 + AO353_04475 0.10 +0.1 963,173 + AO353_04475 0.10 +0.7 963,173 + AO353_04475 0.10 -2.2 963,173 + AO353_04475 0.10 -1.2 963,174 - AO353_04475 0.11 -0.8 963,174 - AO353_04475 0.11 -1.5 963,416 + AO353_04475 0.73 -1.1 963,534 + +0.7 963,534 + +0.5 963,535 - -2.5 963,535 - -0.7 963,535 - +0.1 963,535 - -0.2 963,540 + +2.3 963,540 + +0.1 963,540 + -0.6 963,540 + -0.2 963,540 + +0.8 963,540 + -0.0 963,541 - +0.7 963,541 - +0.7 963,541 - +0.7 963,541 - -0.8 963,541 - -0.4 963,541 - +0.4 963,541 - +0.8 963,541 - +1.3 963,541 - -0.9 963,541 - -1.0 963,541 - -1.0 963,551 - -1.9 963,551 - +1.3 963,551 - -1.5 963,585 + -0.9 963,585 + +2.3 963,585 + +1.0 963,586 - -0.3 963,586 - -1.3 963,586 - -0.3 963,586 - +2.1 963,586 - -0.9 963,586 - -0.5 963,611 + -0.4 963,612 - -0.2 963,612 - +2.0 963,654 + -0.0 963,654 + -0.5 963,654 + -0.2 963,655 - +0.4 963,655 - -0.3 963,687 - +1.0 963,687 - +1.2 963,688 + +0.7 963,688 + +1.3 963,688 + -0.0 963,688 + -1.3 963,688 + +0.4 963,688 + +0.5 963,688 + +0.2 963,688 + -0.5 963,688 + -0.1 963,688 + -0.3 963,688 + +0.2 963,688 + -0.3 963,688 + +1.1 963,688 + +0.7 963,688 + +0.4 963,689 - +0.1 963,689 - +1.3 963,689 - +1.3 963,689 - +0.5 963,689 - -0.7 963,689 - -0.0 963,689 - -1.3 963,689 - -1.4 963,689 - -2.1 963,689 - +0.1 963,700 + -0.3 963,700 + +0.3 963,700 + -1.5 963,700 + +1.7 963,700 + +0.3 963,700 + +0.6 963,701 - -0.3 963,701 - -0.6 963,701 - +0.7 963,701 - +1.3 963,701 - +2.3 963,701 - +0.6 963,701 - +0.1 963,701 - +0.2 963,701 - +0.4 963,701 - +1.7 963,709 - -0.6 963,709 - -1.1 963,717 - +2.0 963,717 - -0.3 963,858 + -0.0 963,858 + +0.6 963,858 + +0.7 963,858 + +1.7 963,858 + +0.1 963,859 - +0.2 963,867 + -0.8 963,867 + -0.1 963,867 + -1.6 963,867 + +0.3 963,868 - +0.6 963,868 - -1.5 963,897 + -1.8 963,897 + +1.0 963,898 - +1.2 963,898 - +0.1 964,293 - +0.1 964,293 - -0.3 964,293 - +2.1 964,293 - -0.8 964,293 - -1.0 964,293 - +0.2 964,293 - -0.6 964,293 - +0.5 964,293 - -0.1 964,293 - -0.5 964,293 - -0.4 964,293 - -0.0 964,386 + -1.2 964,386 + -0.6 964,387 - -1.9 964,387 - +0.1 964,424 + -0.3 964,424 + -0.4 964,425 - -0.5 964,467 + +1.7 964,482 + +2.3 964,483 - AO353_04480 0.14 +0.5 964,483 - AO353_04480 0.14 -1.5
Or see this region's nucleotide sequence