Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3033

Experiment: MoYLS4 with Polymyxin B sulfate 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3032 and DvMF_3033 are separated by 131 nucleotidesDvMF_3033 and DvMF_3034 are separated by 679 nucleotides DvMF_3032: DvMF_3032 - dienelactone hydrolase (RefSeq), at 3,826,332 to 3,827,222 _3032 DvMF_3033: DvMF_3033 - hypothetical protein (RefSeq), at 3,827,354 to 3,828,250 _3033 DvMF_3034: DvMF_3034 - 5,10-methylenetetrahydrofolate reductase (RefSeq), at 3,828,930 to 3,829,805 _3034 Position (kb) 3827 3828 3829Strain fitness (log2 ratio) -2 -1 0 1at 3826.486 kb on - strand, within DvMF_3032at 3826.696 kb on - strand, within DvMF_3032at 3826.767 kb on - strand, within DvMF_3032at 3826.969 kb on + strand, within DvMF_3032at 3826.969 kb on + strand, within DvMF_3032at 3826.982 kb on - strand, within DvMF_3032at 3827.202 kb on + strandat 3827.252 kb on - strandat 3827.300 kb on + strandat 3827.324 kb on + strandat 3827.437 kb on + strandat 3827.441 kb on + strandat 3827.520 kb on - strand, within DvMF_3033at 3827.749 kb on + strand, within DvMF_3033at 3827.916 kb on + strand, within DvMF_3033at 3827.924 kb on - strand, within DvMF_3033at 3827.939 kb on + strand, within DvMF_3033at 3828.134 kb on + strand, within DvMF_3033at 3828.142 kb on - strand, within DvMF_3033at 3828.202 kb on - strandat 3828.466 kb on + strandat 3828.476 kb on + strandat 3828.492 kb on - strandat 3828.586 kb on + strandat 3828.656 kb on + strandat 3828.656 kb on + strandat 3828.656 kb on + strandat 3828.792 kb on + strandat 3828.800 kb on - strandat 3828.802 kb on + strandat 3828.825 kb on - strandat 3828.935 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.125 mg/ml
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3,826,486 - DvMF_3032 0.17 +0.3
3,826,696 - DvMF_3032 0.41 +0.1
3,826,767 - DvMF_3032 0.49 -0.9
3,826,969 + DvMF_3032 0.71 +0.4
3,826,969 + DvMF_3032 0.71 -0.6
3,826,982 - DvMF_3032 0.73 +0.3
3,827,202 + -1.7
3,827,252 - -0.1
3,827,300 + -0.6
3,827,324 + +0.9
3,827,437 + -1.2
3,827,441 + -0.9
3,827,520 - DvMF_3033 0.19 -0.6
3,827,749 + DvMF_3033 0.44 -1.3
3,827,916 + DvMF_3033 0.63 -0.0
3,827,924 - DvMF_3033 0.64 +0.2
3,827,939 + DvMF_3033 0.65 +0.2
3,828,134 + DvMF_3033 0.87 -0.6
3,828,142 - DvMF_3033 0.88 -0.8
3,828,202 - -1.1
3,828,466 + -0.7
3,828,476 + -0.5
3,828,492 - -0.5
3,828,586 + +0.1
3,828,656 + -2.1
3,828,656 + -1.0
3,828,656 + +0.1
3,828,792 + +0.0
3,828,800 - -0.3
3,828,802 + -0.3
3,828,825 - -0.5
3,828,935 + -0.2

Or see this region's nucleotide sequence