Experiment: MoYLS4 with Polymyxin B sulfate 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2780 and DvMF_2781 are separated by 208 nucleotides DvMF_2781 and DvMF_2782 overlap by 4 nucleotides DvMF_2782 and DvMF_2783 are separated by 443 nucleotides
DvMF_2780: DvMF_2780 - ABC transporter, periplasmic substrate-binding protein (RefSeq), at 3,518,077 to 3,518,898
_2780
DvMF_2781: DvMF_2781 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,519,107 to 3,519,802
_2781
DvMF_2782: DvMF_2782 - ABC transporter related (RefSeq), at 3,519,799 to 3,520,653
_2782
DvMF_2783: DvMF_2783 - acetate/CoA ligase (RefSeq), at 3,521,097 to 3,523,052
_2783
Position (kb)
3519
3520
3521 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6 at 3519.192 kb on + strand, within DvMF_2781 at 3519.219 kb on - strand, within DvMF_2781 at 3519.392 kb on - strand, within DvMF_2781 at 3519.498 kb on + strand, within DvMF_2781 at 3519.710 kb on + strand, within DvMF_2781 at 3519.813 kb on + strand at 3519.826 kb on + strand at 3519.959 kb on + strand, within DvMF_2782 at 3519.989 kb on - strand, within DvMF_2782 at 3520.497 kb on - strand, within DvMF_2782 at 3520.595 kb on + strand at 3520.725 kb on - strand at 3520.755 kb on + strand at 3521.097 kb on - strand at 3521.414 kb on - strand, within DvMF_2783 at 3521.476 kb on + strand, within DvMF_2783 at 3521.530 kb on + strand, within DvMF_2783
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.125 mg/ml remove 3,519,192 + DvMF_2781 0.12 -0.3 3,519,219 - DvMF_2781 0.16 -0.6 3,519,392 - DvMF_2781 0.41 +0.4 3,519,498 + DvMF_2781 0.56 -0.3 3,519,710 + DvMF_2781 0.87 -0.1 3,519,813 + +0.5 3,519,826 + -0.2 3,519,959 + DvMF_2782 0.19 -0.5 3,519,989 - DvMF_2782 0.22 -0.8 3,520,497 - DvMF_2782 0.82 -0.2 3,520,595 + +0.6 3,520,725 - -1.1 3,520,755 + +0.6 3,521,097 - -0.2 3,521,414 - DvMF_2783 0.16 +3.0 3,521,476 + DvMF_2783 0.19 +1.1 3,521,530 + DvMF_2783 0.22 +5.8
Or see this region's nucleotide sequence