Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2716

Experiment: MoYLS4 with Polymyxin B sulfate 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2715 and DvMF_2716 are separated by 531 nucleotidesDvMF_2716 and DvMF_2717 are separated by 617 nucleotides DvMF_2715: DvMF_2715 - hypothetical protein (RefSeq), at 3,438,194 to 3,438,523 _2715 DvMF_2716: DvMF_2716 - hypothetical protein (RefSeq), at 3,439,055 to 3,439,375 _2716 DvMF_2717: DvMF_2717 - GTP-binding protein LepA (RefSeq), at 3,439,993 to 3,441,798 _2717 Position (kb) 3439 3440Strain fitness (log2 ratio) -1 0 1at 3438.103 kb on + strandat 3438.253 kb on + strand, within DvMF_2715at 3438.314 kb on + strand, within DvMF_2715at 3438.411 kb on + strand, within DvMF_2715at 3438.836 kb on - strandat 3438.880 kb on - strandat 3438.933 kb on + strandat 3438.941 kb on - strandat 3438.982 kb on + strandat 3438.995 kb on - strandat 3439.032 kb on + strandat 3439.097 kb on + strand, within DvMF_2716at 3439.231 kb on - strand, within DvMF_2716at 3439.317 kb on + strand, within DvMF_2716at 3439.526 kb on - strandat 3439.714 kb on + strandat 3439.742 kb on + strandat 3439.747 kb on + strandat 3439.747 kb on + strandat 3439.771 kb on + strandat 3439.777 kb on + strandat 3439.936 kb on - strandat 3440.002 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.125 mg/ml
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3,438,103 + -0.3
3,438,253 + DvMF_2715 0.18 -0.5
3,438,314 + DvMF_2715 0.36 +0.5
3,438,411 + DvMF_2715 0.66 -0.8
3,438,836 - -0.2
3,438,880 - -1.1
3,438,933 + -1.1
3,438,941 - -0.3
3,438,982 + +0.9
3,438,995 - -0.8
3,439,032 + -0.1
3,439,097 + DvMF_2716 0.13 -0.8
3,439,231 - DvMF_2716 0.55 -0.8
3,439,317 + DvMF_2716 0.82 -1.0
3,439,526 - +0.2
3,439,714 + -0.6
3,439,742 + -0.6
3,439,747 + +0.8
3,439,747 + +0.1
3,439,771 + +0.3
3,439,777 + -0.3
3,439,936 - -0.2
3,440,002 + +1.0

Or see this region's nucleotide sequence