Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2618

Experiment: MoYLS4 with Polymyxin B sulfate 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2617 and DvMF_2618 are separated by 299 nucleotidesDvMF_2618 and DvMF_2619 are separated by 24 nucleotidesDvMF_2619 and DvMF_2620 are separated by 158 nucleotides DvMF_2617: DvMF_2617 - nitrogenase molybdenum-iron protein beta chain (RefSeq), at 3,305,945 to 3,307,321 _2617 DvMF_2618: DvMF_2618 - Dinitrogenase iron-molybdenum cofactor biosynthesis protein (RefSeq), at 3,307,621 to 3,308,880 _2618 DvMF_2619: DvMF_2619 - ferredoxin, 2Fe-2S (RefSeq), at 3,308,905 to 3,309,207 _2619 DvMF_2620: DvMF_2620 - nitrogenase MoFe cofactor biosynthesis protein NifE (RefSeq), at 3,309,366 to 3,310,790 _2620 Position (kb) 3307 3308 3309Strain fitness (log2 ratio) -3 -2 -1 0 1at 3306.634 kb on - strand, within DvMF_2617at 3306.634 kb on - strand, within DvMF_2617at 3306.668 kb on - strand, within DvMF_2617at 3306.729 kb on + strand, within DvMF_2617at 3306.739 kb on + strand, within DvMF_2617at 3306.858 kb on - strand, within DvMF_2617at 3307.114 kb on + strand, within DvMF_2617at 3307.228 kb on - strandat 3307.230 kb on - strandat 3307.574 kb on - strandat 3307.585 kb on - strandat 3307.828 kb on + strand, within DvMF_2618at 3307.836 kb on - strand, within DvMF_2618at 3307.836 kb on - strand, within DvMF_2618at 3308.016 kb on + strand, within DvMF_2618at 3308.031 kb on + strand, within DvMF_2618at 3308.153 kb on - strand, within DvMF_2618at 3308.717 kb on - strand, within DvMF_2618at 3308.848 kb on + strandat 3308.964 kb on - strand, within DvMF_2619at 3309.124 kb on + strand, within DvMF_2619at 3309.302 kb on - strandat 3309.504 kb on - strandat 3309.549 kb on + strand, within DvMF_2620at 3309.551 kb on + strand, within DvMF_2620at 3309.571 kb on - strand, within DvMF_2620at 3309.585 kb on - strand, within DvMF_2620at 3309.606 kb on + strand, within DvMF_2620

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.125 mg/ml
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3,306,634 - DvMF_2617 0.50 -0.7
3,306,634 - DvMF_2617 0.50 -0.5
3,306,668 - DvMF_2617 0.53 -0.3
3,306,729 + DvMF_2617 0.57 -0.3
3,306,739 + DvMF_2617 0.58 -0.5
3,306,858 - DvMF_2617 0.66 -0.4
3,307,114 + DvMF_2617 0.85 -0.0
3,307,228 - -0.4
3,307,230 - -0.1
3,307,574 - -0.6
3,307,585 - -0.9
3,307,828 + DvMF_2618 0.16 -0.5
3,307,836 - DvMF_2618 0.17 +0.1
3,307,836 - DvMF_2618 0.17 -1.1
3,308,016 + DvMF_2618 0.31 -0.9
3,308,031 + DvMF_2618 0.33 -0.7
3,308,153 - DvMF_2618 0.42 -0.8
3,308,717 - DvMF_2618 0.87 -0.4
3,308,848 + -0.4
3,308,964 - DvMF_2619 0.19 -0.5
3,309,124 + DvMF_2619 0.72 -0.4
3,309,302 - -0.2
3,309,504 - -0.7
3,309,549 + DvMF_2620 0.13 -3.7
3,309,551 + DvMF_2620 0.13 -0.5
3,309,571 - DvMF_2620 0.14 -0.6
3,309,585 - DvMF_2620 0.15 -0.4
3,309,606 + DvMF_2620 0.17 +0.1

Or see this region's nucleotide sequence