Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2297

Experiment: MoYLS4 with Polymyxin B sulfate 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2295 and DvMF_2296 are separated by 256 nucleotidesDvMF_2296 and DvMF_2297 are separated by 39 nucleotidesDvMF_2297 and DvMF_2298 are separated by 386 nucleotides DvMF_2295: DvMF_2295 - chaperone protein DnaJ (RefSeq), at 2,883,088 to 2,884,212 _2295 DvMF_2296: DvMF_2296 - hypothetical protein (RefSeq), at 2,884,469 to 2,885,122 _2296 DvMF_2297: DvMF_2297 - hypothetical protein (RefSeq), at 2,885,162 to 2,885,677 _2297 DvMF_2298: DvMF_2298 - outer membrane efflux protein (RefSeq), at 2,886,064 to 2,887,641 _2298 Position (kb) 2885 2886Strain fitness (log2 ratio) -2 -1 0 1at 2884.554 kb on + strand, within DvMF_2296at 2884.640 kb on - strand, within DvMF_2296at 2884.668 kb on - strand, within DvMF_2296at 2884.702 kb on + strand, within DvMF_2296at 2884.735 kb on + strand, within DvMF_2296at 2884.951 kb on - strand, within DvMF_2296at 2885.067 kb on + strandat 2885.236 kb on - strand, within DvMF_2297at 2885.340 kb on - strand, within DvMF_2297at 2885.454 kb on - strand, within DvMF_2297at 2885.488 kb on - strand, within DvMF_2297at 2885.786 kb on - strandat 2885.914 kb on + strandat 2886.043 kb on - strandat 2886.133 kb on - strandat 2886.325 kb on - strand, within DvMF_2298at 2886.369 kb on - strand, within DvMF_2298at 2886.450 kb on - strand, within DvMF_2298at 2886.651 kb on - strand, within DvMF_2298

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.125 mg/ml
remove
2,884,554 + DvMF_2296 0.13 -1.4
2,884,640 - DvMF_2296 0.26 -1.4
2,884,668 - DvMF_2296 0.30 -0.2
2,884,702 + DvMF_2296 0.36 -1.3
2,884,735 + DvMF_2296 0.41 -0.7
2,884,951 - DvMF_2296 0.74 -0.7
2,885,067 + -1.1
2,885,236 - DvMF_2297 0.14 -1.7
2,885,340 - DvMF_2297 0.34 -2.7
2,885,454 - DvMF_2297 0.57 -0.4
2,885,488 - DvMF_2297 0.63 -0.6
2,885,786 - -0.5
2,885,914 + -1.3
2,886,043 - -1.0
2,886,133 - -0.5
2,886,325 - DvMF_2298 0.17 -1.1
2,886,369 - DvMF_2298 0.19 -0.6
2,886,450 - DvMF_2298 0.24 -0.6
2,886,651 - DvMF_2298 0.37 -0.3

Or see this region's nucleotide sequence