Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2293

Experiment: MoYLS4 with Polymyxin B sulfate 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2292 and DvMF_2293 are separated by 157 nucleotidesDvMF_2293 and DvMF_2294 are separated by 649 nucleotidesDvMF_2294 and DvMF_2295 are separated by 6 nucleotides DvMF_2292: DvMF_2292 - Peptidase M23 (RefSeq), at 2,880,398 to 2,881,300 _2292 DvMF_2293: DvMF_2293 - PP-loop domain protein (RefSeq), at 2,881,458 to 2,882,204 _2293 DvMF_2294: DvMF_2294 - DNA-directed RNA polymerase, omega subunit (RefSeq), at 2,882,854 to 2,883,081 _2294 DvMF_2295: DvMF_2295 - chaperone protein DnaJ (RefSeq), at 2,883,088 to 2,884,212 _2295 Position (kb) 2881 2882 2883Strain fitness (log2 ratio) -1 0 1 2at 2881.349 kb on + strandat 2881.636 kb on - strand, within DvMF_2293at 2881.803 kb on + strand, within DvMF_2293at 2881.907 kb on - strand, within DvMF_2293at 2881.990 kb on + strand, within DvMF_2293at 2882.171 kb on + strandat 2882.179 kb on + strandat 2882.464 kb on - strandat 2882.768 kb on + strandat 2883.112 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.125 mg/ml
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2,881,349 + -1.4
2,881,636 - DvMF_2293 0.24 -1.0
2,881,803 + DvMF_2293 0.46 -0.5
2,881,907 - DvMF_2293 0.60 -1.4
2,881,990 + DvMF_2293 0.71 -1.6
2,882,171 + -0.3
2,882,179 + +0.2
2,882,464 - -0.7
2,882,768 + -1.3
2,883,112 - +2.1

Or see this region's nucleotide sequence