Experiment: MoYLS4 with Polymyxin B sulfate 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1826 and DvMF_1827 are separated by 3 nucleotides DvMF_1827 and DvMF_1828 are separated by 1 nucleotides DvMF_1828 and DvMF_1829 are separated by 567 nucleotides
DvMF_1826: DvMF_1826 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 2,228,497 to 2,229,498
_1826
DvMF_1827: DvMF_1827 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,229,502 to 2,230,422
_1827
DvMF_1828: DvMF_1828 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,230,424 to 2,231,401
_1828
DvMF_1829: DvMF_1829 - extracellular solute-binding protein family 5 (RefSeq), at 2,231,969 to 2,233,531
_1829
Position (kb)
2230
2231
2232 Strain fitness (log2 ratio)
-1
0
1 at 2229.665 kb on + strand, within DvMF_1827 at 2229.761 kb on - strand, within DvMF_1827 at 2229.962 kb on - strand, within DvMF_1827 at 2230.161 kb on - strand, within DvMF_1827 at 2230.328 kb on + strand, within DvMF_1827 at 2230.472 kb on - strand at 2230.607 kb on + strand, within DvMF_1828 at 2230.701 kb on - strand, within DvMF_1828 at 2230.719 kb on + strand, within DvMF_1828 at 2230.719 kb on + strand, within DvMF_1828 at 2230.719 kb on + strand, within DvMF_1828 at 2230.727 kb on - strand, within DvMF_1828 at 2231.494 kb on - strand at 2231.696 kb on + strand at 2231.883 kb on + strand at 2232.017 kb on - strand at 2232.059 kb on - strand at 2232.137 kb on - strand, within DvMF_1829 at 2232.336 kb on + strand, within DvMF_1829
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.125 mg/ml remove 2,229,665 + DvMF_1827 0.18 +0.6 2,229,761 - DvMF_1827 0.28 -0.1 2,229,962 - DvMF_1827 0.50 +0.1 2,230,161 - DvMF_1827 0.72 +0.1 2,230,328 + DvMF_1827 0.90 -0.0 2,230,472 - +0.0 2,230,607 + DvMF_1828 0.19 +0.0 2,230,701 - DvMF_1828 0.28 -0.7 2,230,719 + DvMF_1828 0.30 -0.1 2,230,719 + DvMF_1828 0.30 +1.1 2,230,719 + DvMF_1828 0.30 -0.3 2,230,727 - DvMF_1828 0.31 +0.3 2,231,494 - -0.3 2,231,696 + -0.4 2,231,883 + -0.2 2,232,017 - +0.4 2,232,059 - -0.3 2,232,137 - DvMF_1829 0.11 -1.3 2,232,336 + DvMF_1829 0.23 +0.5
Or see this region's nucleotide sequence