Experiment: MoYLS4 with Polymyxin B sulfate 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1766 and DvMF_1767 are separated by 1 nucleotides DvMF_1767 and DvMF_1768 overlap by 4 nucleotides DvMF_1768 and DvMF_1769 are separated by 2 nucleotides DvMF_1769 and DvMF_1770 are separated by 72 nucleotides
DvMF_1766: DvMF_1766 - sigma54 specific transcriptional regulator with PAS/PAC sensor, Fis family (RefSeq), at 2,162,420 to 2,164,123
_1766
DvMF_1767: DvMF_1767 - hypothetical protein (RefSeq), at 2,164,125 to 2,164,472
_1767
DvMF_1768: DvMF_1768 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,164,469 to 2,166,199
_1768
DvMF_1769: DvMF_1769 - response regulator receiver protein (RefSeq), at 2,166,202 to 2,166,591
_1769
DvMF_1770: DvMF_1770 - hypothetical protein (RefSeq), at 2,166,664 to 2,167,398
_1770
Position (kb)
2164
2165
2166
2167 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2163.483 kb on + strand, within DvMF_1766 at 2163.574 kb on - strand, within DvMF_1766 at 2163.710 kb on + strand, within DvMF_1766 at 2163.727 kb on + strand, within DvMF_1766 at 2163.728 kb on - strand, within DvMF_1766 at 2163.780 kb on + strand, within DvMF_1766 at 2163.874 kb on + strand, within DvMF_1766 at 2163.990 kb on - strand at 2164.125 kb on - strand at 2164.154 kb on - strand at 2164.342 kb on + strand, within DvMF_1767 at 2164.423 kb on - strand, within DvMF_1767 at 2164.651 kb on - strand, within DvMF_1768 at 2164.790 kb on - strand, within DvMF_1768 at 2164.942 kb on + strand, within DvMF_1768 at 2164.950 kb on - strand, within DvMF_1768 at 2164.950 kb on - strand, within DvMF_1768 at 2164.950 kb on - strand, within DvMF_1768 at 2165.009 kb on + strand, within DvMF_1768 at 2165.080 kb on + strand, within DvMF_1768 at 2165.211 kb on + strand, within DvMF_1768 at 2165.234 kb on - strand, within DvMF_1768 at 2165.498 kb on - strand, within DvMF_1768 at 2165.664 kb on - strand, within DvMF_1768 at 2165.742 kb on - strand, within DvMF_1768 at 2166.026 kb on - strand, within DvMF_1768 at 2166.341 kb on + strand, within DvMF_1769 at 2166.815 kb on - strand, within DvMF_1770 at 2166.817 kb on + strand, within DvMF_1770 at 2166.845 kb on - strand, within DvMF_1770 at 2166.845 kb on - strand, within DvMF_1770 at 2167.061 kb on + strand, within DvMF_1770 at 2167.063 kb on - strand, within DvMF_1770
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.125 mg/ml remove 2,163,483 + DvMF_1766 0.62 -1.2 2,163,574 - DvMF_1766 0.68 -1.2 2,163,710 + DvMF_1766 0.76 -0.9 2,163,727 + DvMF_1766 0.77 -1.1 2,163,728 - DvMF_1766 0.77 -1.3 2,163,780 + DvMF_1766 0.80 -1.1 2,163,874 + DvMF_1766 0.85 -0.6 2,163,990 - -1.7 2,164,125 - +0.0 2,164,154 - -0.6 2,164,342 + DvMF_1767 0.62 -0.3 2,164,423 - DvMF_1767 0.86 -1.0 2,164,651 - DvMF_1768 0.11 +3.0 2,164,790 - DvMF_1768 0.19 +3.3 2,164,942 + DvMF_1768 0.27 +2.6 2,164,950 - DvMF_1768 0.28 +2.3 2,164,950 - DvMF_1768 0.28 +1.9 2,164,950 - DvMF_1768 0.28 +2.6 2,165,009 + DvMF_1768 0.31 +1.4 2,165,080 + DvMF_1768 0.35 +3.0 2,165,211 + DvMF_1768 0.43 +2.1 2,165,234 - DvMF_1768 0.44 +2.5 2,165,498 - DvMF_1768 0.59 +3.4 2,165,664 - DvMF_1768 0.69 +2.7 2,165,742 - DvMF_1768 0.74 +2.7 2,166,026 - DvMF_1768 0.90 +2.4 2,166,341 + DvMF_1769 0.36 +2.0 2,166,815 - DvMF_1770 0.21 -0.9 2,166,817 + DvMF_1770 0.21 -1.1 2,166,845 - DvMF_1770 0.25 -0.8 2,166,845 - DvMF_1770 0.25 -0.5 2,167,061 + DvMF_1770 0.54 -0.2 2,167,063 - DvMF_1770 0.54 -0.8
Or see this region's nucleotide sequence