Experiment: MoYLS4 with Polymyxin B sulfate 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1707 and DvMF_1708 are separated by 61 nucleotides DvMF_1708 and DvMF_1709 are separated by 105 nucleotides DvMF_1709 and DvMF_1710 are separated by 27 nucleotides
DvMF_1707: DvMF_1707 - protein of unknown function UPF0118 (RefSeq), at 2,085,102 to 2,086,616
_1707
DvMF_1708: DvMF_1708 - transcriptional regulator, Crp/Fnr family (RefSeq), at 2,086,678 to 2,087,367
_1708
DvMF_1709: DvMF_1709 - 4Fe-4S ferredoxin, iron-sulfur binding domain protein (RefSeq), at 2,087,473 to 2,087,829
_1709
DvMF_1710: DvMF_1710 - fumarate reductase/succinate dehydrogenase flavoprotein domain protein (RefSeq), at 2,087,857 to 2,089,641
_1710
Position (kb)
2086
2087
2088 Strain fitness (log2 ratio)
-1
0
1 at 2085.783 kb on - strand, within DvMF_1707 at 2086.016 kb on - strand, within DvMF_1707 at 2086.272 kb on - strand, within DvMF_1707 at 2086.384 kb on + strand, within DvMF_1707 at 2086.392 kb on - strand, within DvMF_1707 at 2086.449 kb on + strand, within DvMF_1707 at 2086.604 kb on - strand at 2086.609 kb on - strand at 2086.678 kb on + strand at 2086.678 kb on + strand at 2086.937 kb on - strand, within DvMF_1708 at 2086.992 kb on + strand, within DvMF_1708 at 2086.994 kb on - strand, within DvMF_1708 at 2087.459 kb on + strand at 2087.477 kb on - strand at 2087.601 kb on - strand, within DvMF_1709 at 2087.606 kb on + strand, within DvMF_1709 at 2087.606 kb on + strand, within DvMF_1709 at 2087.766 kb on - strand, within DvMF_1709 at 2087.803 kb on - strand at 2087.854 kb on + strand at 2087.902 kb on + strand at 2088.060 kb on + strand, within DvMF_1710 at 2088.070 kb on + strand, within DvMF_1710 at 2088.090 kb on + strand, within DvMF_1710 at 2088.090 kb on + strand, within DvMF_1710 at 2088.166 kb on + strand, within DvMF_1710
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.125 mg/ml remove 2,085,783 - DvMF_1707 0.45 -1.5 2,086,016 - DvMF_1707 0.60 -0.4 2,086,272 - DvMF_1707 0.77 -0.5 2,086,384 + DvMF_1707 0.85 +0.6 2,086,392 - DvMF_1707 0.85 -0.1 2,086,449 + DvMF_1707 0.89 -1.0 2,086,604 - -0.8 2,086,609 - -0.7 2,086,678 + -0.6 2,086,678 + -0.0 2,086,937 - DvMF_1708 0.38 -0.9 2,086,992 + DvMF_1708 0.46 -0.7 2,086,994 - DvMF_1708 0.46 -0.7 2,087,459 + -0.8 2,087,477 - -0.4 2,087,601 - DvMF_1709 0.36 +0.3 2,087,606 + DvMF_1709 0.37 -0.5 2,087,606 + DvMF_1709 0.37 -1.2 2,087,766 - DvMF_1709 0.82 -0.5 2,087,803 - -0.6 2,087,854 + +0.4 2,087,902 + -1.1 2,088,060 + DvMF_1710 0.11 -0.1 2,088,070 + DvMF_1710 0.12 -0.0 2,088,090 + DvMF_1710 0.13 -0.5 2,088,090 + DvMF_1710 0.13 -1.3 2,088,166 + DvMF_1710 0.17 +0.3
Or see this region's nucleotide sequence