Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1512

Experiment: MoYLS4 with Polymyxin B sulfate 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1511 and DvMF_1512 are separated by 146 nucleotidesDvMF_1512 and DvMF_1513 are separated by 376 nucleotides DvMF_1511: DvMF_1511 - hypothetical protein (RefSeq), at 1,863,263 to 1,864,009 _1511 DvMF_1512: DvMF_1512 - endoribonuclease L-PSP (RefSeq), at 1,864,156 to 1,864,542 _1512 DvMF_1513: DvMF_1513 - metal dependent phosphohydrolase (RefSeq), at 1,864,919 to 1,865,803 _1513 Position (kb) 1864 1865Strain fitness (log2 ratio) -2 -1 0 1at 1863.481 kb on + strand, within DvMF_1511at 1863.631 kb on - strand, within DvMF_1511at 1863.678 kb on + strand, within DvMF_1511at 1863.686 kb on - strand, within DvMF_1511at 1863.817 kb on + strand, within DvMF_1511at 1863.825 kb on - strand, within DvMF_1511at 1864.081 kb on - strandat 1864.140 kb on + strandat 1864.167 kb on - strandat 1864.509 kb on - strandat 1865.009 kb on - strand, within DvMF_1513at 1865.014 kb on - strand, within DvMF_1513at 1865.249 kb on + strand, within DvMF_1513at 1865.528 kb on - strand, within DvMF_1513

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.125 mg/ml
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1,863,481 + DvMF_1511 0.29 -0.4
1,863,631 - DvMF_1511 0.49 -0.2
1,863,678 + DvMF_1511 0.56 -0.4
1,863,686 - DvMF_1511 0.57 -1.9
1,863,817 + DvMF_1511 0.74 +1.3
1,863,825 - DvMF_1511 0.75 -2.5
1,864,081 - -0.5
1,864,140 + -0.3
1,864,167 - +0.1
1,864,509 - -0.6
1,865,009 - DvMF_1513 0.10 -0.6
1,865,014 - DvMF_1513 0.11 -0.3
1,865,249 + DvMF_1513 0.37 -0.8
1,865,528 - DvMF_1513 0.69 -0.2

Or see this region's nucleotide sequence