Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1437

Experiment: MoYLS4 with Polymyxin B sulfate 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1436 and DvMF_1437 are separated by 226 nucleotidesDvMF_1437 and DvMF_1438 are separated by 154 nucleotides DvMF_1436: DvMF_1436 - hypothetical protein (RefSeq), at 1,758,348 to 1,759,229 _1436 DvMF_1437: DvMF_1437 - transcriptional regulator, MarR family (RefSeq), at 1,759,456 to 1,759,872 _1437 DvMF_1438: DvMF_1438 - protein of unknown function UPF0016 (RefSeq), at 1,760,027 to 1,760,614 _1438 Position (kb) 1759 1760Strain fitness (log2 ratio) -1 0 1at 1758.513 kb on + strand, within DvMF_1436at 1758.622 kb on - strand, within DvMF_1436at 1758.626 kb on - strand, within DvMF_1436at 1758.633 kb on + strand, within DvMF_1436at 1758.641 kb on - strand, within DvMF_1436at 1758.684 kb on - strand, within DvMF_1436at 1758.819 kb on - strand, within DvMF_1436at 1758.835 kb on + strand, within DvMF_1436at 1759.054 kb on + strand, within DvMF_1436at 1759.096 kb on - strand, within DvMF_1436at 1759.213 kb on - strandat 1759.396 kb on + strandat 1759.548 kb on + strand, within DvMF_1437at 1759.552 kb on - strand, within DvMF_1437at 1760.007 kb on - strandat 1760.033 kb on - strandat 1760.033 kb on - strandat 1760.191 kb on + strand, within DvMF_1438at 1760.199 kb on - strand, within DvMF_1438at 1760.293 kb on - strand, within DvMF_1438at 1760.325 kb on + strand, within DvMF_1438at 1760.465 kb on - strand, within DvMF_1438at 1760.658 kb on + strandat 1760.750 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.125 mg/ml
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1,758,513 + DvMF_1436 0.19 -0.8
1,758,622 - DvMF_1436 0.31 -0.5
1,758,626 - DvMF_1436 0.32 -0.3
1,758,633 + DvMF_1436 0.32 -0.7
1,758,641 - DvMF_1436 0.33 +0.5
1,758,684 - DvMF_1436 0.38 -1.5
1,758,819 - DvMF_1436 0.53 -0.8
1,758,835 + DvMF_1436 0.55 -0.9
1,759,054 + DvMF_1436 0.80 -0.5
1,759,096 - DvMF_1436 0.85 -0.5
1,759,213 - +0.1
1,759,396 + -0.7
1,759,548 + DvMF_1437 0.22 -0.0
1,759,552 - DvMF_1437 0.23 +0.1
1,760,007 - -0.7
1,760,033 - -0.5
1,760,033 - -0.7
1,760,191 + DvMF_1438 0.28 +0.3
1,760,199 - DvMF_1438 0.29 -0.0
1,760,293 - DvMF_1438 0.45 -0.2
1,760,325 + DvMF_1438 0.51 +0.0
1,760,465 - DvMF_1438 0.74 +0.2
1,760,658 + -0.0
1,760,750 + -1.2

Or see this region's nucleotide sequence