Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0944

Experiment: MoYLS4 with Polymyxin B sulfate 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0942 and DvMF_0943 are separated by 331 nucleotidesDvMF_0943 and DvMF_0944 are separated by 408 nucleotidesDvMF_0944 and DvMF_0945 are separated by 612 nucleotides DvMF_0942: DvMF_0942 - N-(5'phosphoribosyl)anthranilate isomerase (PRAI) (RefSeq), at 1,142,845 to 1,143,618 _0942 DvMF_0943: DvMF_0943 - hypothetical protein (RefSeq), at 1,143,950 to 1,144,045 _0943 DvMF_0944: DvMF_0944 - protein of unknown function DUF6 transmembrane (RefSeq), at 1,144,454 to 1,145,299 _0944 DvMF_0945: DvMF_0945 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,145,912 to 1,146,946 _0945 Position (kb) 1144 1145 1146Strain fitness (log2 ratio) -1 0 1at 1143.506 kb on + strand, within DvMF_0942at 1143.601 kb on + strandat 1143.757 kb on - strandat 1143.782 kb on + strandat 1143.782 kb on + strandat 1143.790 kb on - strandat 1143.790 kb on - strandat 1143.790 kb on - strandat 1143.790 kb on - strandat 1143.828 kb on + strandat 1144.527 kb on - strandat 1144.662 kb on - strand, within DvMF_0944at 1144.880 kb on - strand, within DvMF_0944at 1144.975 kb on + strand, within DvMF_0944at 1144.983 kb on - strand, within DvMF_0944at 1145.030 kb on - strand, within DvMF_0944at 1145.053 kb on + strand, within DvMF_0944at 1145.236 kb on - strandat 1145.274 kb on + strandat 1145.279 kb on + strandat 1145.383 kb on + strandat 1145.556 kb on + strandat 1145.647 kb on - strandat 1146.000 kb on + strandat 1146.024 kb on - strand, within DvMF_0945at 1146.130 kb on - strand, within DvMF_0945

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.125 mg/ml
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1,143,506 + DvMF_0942 0.85 -1.2
1,143,601 + -0.4
1,143,757 - -0.2
1,143,782 + -0.8
1,143,782 + -1.6
1,143,790 - -0.5
1,143,790 - -0.7
1,143,790 - -0.9
1,143,790 - -0.3
1,143,828 + -0.8
1,144,527 - -0.3
1,144,662 - DvMF_0944 0.25 -0.5
1,144,880 - DvMF_0944 0.50 -0.4
1,144,975 + DvMF_0944 0.62 -0.6
1,144,983 - DvMF_0944 0.63 -0.4
1,145,030 - DvMF_0944 0.68 -0.1
1,145,053 + DvMF_0944 0.71 +1.1
1,145,236 - -0.3
1,145,274 + -0.5
1,145,279 + -1.3
1,145,383 + -0.6
1,145,556 + -0.6
1,145,647 - -0.6
1,146,000 + +1.2
1,146,024 - DvMF_0945 0.11 -0.8
1,146,130 - DvMF_0945 0.21 -0.2

Or see this region's nucleotide sequence