Experiment: MoYLS4 with Polymyxin B sulfate 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0898 and DvMF_0899 overlap by 23 nucleotides DvMF_0899 and DvMF_0900 are separated by 139 nucleotides DvMF_0900 and DvMF_0901 are separated by 124 nucleotides DvMF_0901 and DvMF_0902 are separated by 267 nucleotides
DvMF_0898: DvMF_0898 - pyridine nucleotide-disulphide oxidoreductase dimerisation region (RefSeq), at 1,082,059 to 1,083,585
_0898
DvMF_0899: DvMF_0899 - SNARE associated Golgi protein (RefSeq), at 1,083,563 to 1,084,339
_0899
DvMF_0900: DvMF_0900 - Glucokinase (RefSeq), at 1,084,479 to 1,085,576
_0900
DvMF_0901: DvMF_0901 - type IV pilus assembly PilZ (RefSeq), at 1,085,701 to 1,086,051
_0901
DvMF_0902: DvMF_0902 - hypothetical protein (RefSeq), at 1,086,319 to 1,087,098
_0902
Position (kb)
1084
1085
1086 Strain fitness (log2 ratio)
-2
-1
0
1 at 1083.665 kb on + strand, within DvMF_0899 at 1083.930 kb on + strand, within DvMF_0899 at 1084.038 kb on + strand, within DvMF_0899 at 1084.040 kb on + strand, within DvMF_0899 at 1084.046 kb on - strand, within DvMF_0899 at 1084.100 kb on + strand, within DvMF_0899 at 1084.100 kb on + strand, within DvMF_0899 at 1084.108 kb on - strand, within DvMF_0899 at 1084.108 kb on - strand, within DvMF_0899 at 1084.172 kb on - strand, within DvMF_0899 at 1084.174 kb on + strand, within DvMF_0899 at 1084.182 kb on - strand, within DvMF_0899 at 1084.226 kb on - strand, within DvMF_0899 at 1084.330 kb on - strand at 1084.394 kb on + strand at 1084.418 kb on - strand at 1084.864 kb on - strand, within DvMF_0900 at 1084.879 kb on - strand, within DvMF_0900 at 1085.212 kb on + strand, within DvMF_0900 at 1085.220 kb on - strand, within DvMF_0900 at 1086.104 kb on + strand at 1086.104 kb on + strand at 1086.137 kb on + strand at 1086.302 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.125 mg/ml remove 1,083,665 + DvMF_0899 0.13 -0.9 1,083,930 + DvMF_0899 0.47 +0.3 1,084,038 + DvMF_0899 0.61 -0.3 1,084,040 + DvMF_0899 0.61 -0.2 1,084,046 - DvMF_0899 0.62 +0.3 1,084,100 + DvMF_0899 0.69 -2.5 1,084,100 + DvMF_0899 0.69 -0.4 1,084,108 - DvMF_0899 0.70 -0.4 1,084,108 - DvMF_0899 0.70 -0.5 1,084,172 - DvMF_0899 0.78 -0.4 1,084,174 + DvMF_0899 0.79 -0.0 1,084,182 - DvMF_0899 0.80 -0.0 1,084,226 - DvMF_0899 0.85 -0.0 1,084,330 - -1.3 1,084,394 + -0.1 1,084,418 - -0.5 1,084,864 - DvMF_0900 0.35 -1.1 1,084,879 - DvMF_0900 0.36 -0.0 1,085,212 + DvMF_0900 0.67 +1.5 1,085,220 - DvMF_0900 0.67 -0.4 1,086,104 + -1.1 1,086,104 + -0.2 1,086,137 + -0.0 1,086,302 - -0.7
Or see this region's nucleotide sequence