Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0881

Experiment: MoYLS4 with Polymyxin B sulfate 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0879 and DvMF_0880 are separated by 174 nucleotidesDvMF_0880 and DvMF_0881 are separated by 107 nucleotidesDvMF_0881 and DvMF_0882 are separated by 319 nucleotides DvMF_0879: DvMF_0879 - hypothetical protein (RefSeq), at 1,062,552 to 1,062,815 _0879 DvMF_0880: DvMF_0880 - phosphate uptake regulator, PhoU (RefSeq), at 1,062,990 to 1,063,670 _0880 DvMF_0881: DvMF_0881 - phosphate ABC transporter, ATPase subunit (RefSeq), at 1,063,778 to 1,064,545 _0881 DvMF_0882: DvMF_0882 - two component transcriptional regulator, winged helix family (RefSeq), at 1,064,865 to 1,065,557 _0882 Position (kb) 1063 1064 1065Strain fitness (log2 ratio) -1 0 1at 1062.978 kb on - strandat 1063.161 kb on + strand, within DvMF_0880at 1063.229 kb on + strand, within DvMF_0880at 1063.450 kb on + strand, within DvMF_0880at 1063.458 kb on - strand, within DvMF_0880at 1063.513 kb on - strand, within DvMF_0880at 1064.059 kb on - strand, within DvMF_0881at 1064.098 kb on + strand, within DvMF_0881at 1064.627 kb on + strandat 1064.723 kb on - strandat 1064.963 kb on - strand, within DvMF_0882at 1065.009 kb on - strand, within DvMF_0882at 1065.139 kb on - strand, within DvMF_0882at 1065.478 kb on - strand, within DvMF_0882

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.125 mg/ml
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1,062,978 - -0.4
1,063,161 + DvMF_0880 0.25 -0.3
1,063,229 + DvMF_0880 0.35 -0.7
1,063,450 + DvMF_0880 0.68 -0.1
1,063,458 - DvMF_0880 0.69 -1.4
1,063,513 - DvMF_0880 0.77 +0.4
1,064,059 - DvMF_0881 0.37 -1.0
1,064,098 + DvMF_0881 0.42 -0.3
1,064,627 + -0.4
1,064,723 - -0.1
1,064,963 - DvMF_0882 0.14 -1.4
1,065,009 - DvMF_0882 0.21 -0.2
1,065,139 - DvMF_0882 0.40 +0.1
1,065,478 - DvMF_0882 0.88 +0.7

Or see this region's nucleotide sequence