Experiment: MoYLS4 with Polymyxin B sulfate 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0586 and DvMF_0587 are separated by 543 nucleotides DvMF_0587 and DvMF_0588 overlap by 4 nucleotides DvMF_0588 and DvMF_0589 overlap by 4 nucleotides
DvMF_0586: DvMF_0586 - transcriptional regulator, XRE family (RefSeq), at 694,753 to 695,766
_0586
DvMF_0587: DvMF_0587 - hypothetical protein (RefSeq), at 696,310 to 697,458
_0587
DvMF_0588: DvMF_0588 - hypothetical protein (RefSeq), at 697,455 to 698,219
_0588
DvMF_0589: DvMF_0589 - glycosyl transferase, group 2 family protein (RefSeq), at 698,216 to 699,343
_0589
Position (kb) 696
697
698 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 695.334 kb on + strand, within DvMF_0586 at 695.352 kb on + strand, within DvMF_0586 at 695.627 kb on + strand, within DvMF_0586 at 696.629 kb on + strand, within DvMF_0587 at 696.824 kb on + strand, within DvMF_0587 at 696.837 kb on - strand, within DvMF_0587 at 696.855 kb on + strand, within DvMF_0587 at 696.868 kb on + strand, within DvMF_0587 at 696.878 kb on + strand, within DvMF_0587 at 697.069 kb on + strand, within DvMF_0587 at 697.129 kb on + strand, within DvMF_0587 at 697.154 kb on + strand, within DvMF_0587 at 697.201 kb on + strand, within DvMF_0587 at 697.204 kb on - strand, within DvMF_0587 at 697.443 kb on - strand at 697.493 kb on + strand at 697.501 kb on - strand at 697.810 kb on - strand, within DvMF_0588 at 697.845 kb on + strand, within DvMF_0588 at 697.979 kb on + strand, within DvMF_0588 at 698.076 kb on - strand, within DvMF_0588 at 698.177 kb on + strand at 698.285 kb on - strand at 698.310 kb on + strand at 698.382 kb on - strand, within DvMF_0589
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.125 mg/ml remove 695,334 + DvMF_0586 0.57 -0.5 695,352 + DvMF_0586 0.59 -0.6 695,627 + DvMF_0586 0.86 -0.9 696,629 + DvMF_0587 0.28 -1.4 696,824 + DvMF_0587 0.45 -1.1 696,837 - DvMF_0587 0.46 -1.0 696,855 + DvMF_0587 0.47 -0.3 696,868 + DvMF_0587 0.49 -0.5 696,878 + DvMF_0587 0.49 -1.3 697,069 + DvMF_0587 0.66 -0.9 697,129 + DvMF_0587 0.71 -2.6 697,154 + DvMF_0587 0.73 -1.7 697,201 + DvMF_0587 0.78 -0.9 697,204 - DvMF_0587 0.78 -0.5 697,443 - -2.1 697,493 + -0.6 697,501 - +1.4 697,810 - DvMF_0588 0.46 +0.7 697,845 + DvMF_0588 0.51 -2.8 697,979 + DvMF_0588 0.68 -1.6 698,076 - DvMF_0588 0.81 -0.7 698,177 + -0.6 698,285 - -0.4 698,310 + +0.0 698,382 - DvMF_0589 0.15 -0.4
Or see this region's nucleotide sequence