Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0405

Experiment: MoYLS4 with Polymyxin B sulfate 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0404 and DvMF_0405 are separated by 151 nucleotidesDvMF_0405 and DvMF_0406 are separated by 141 nucleotides DvMF_0404: DvMF_0404 - fructose-1,6-bisphosphatase (RefSeq), at 474,710 to 475,723 _0404 DvMF_0405: DvMF_0405 - hypothetical protein (RefSeq), at 475,875 to 476,840 _0405 DvMF_0406: DvMF_0406 - Tetratricopeptide TPR_4 (RefSeq), at 476,982 to 477,947 _0406 Position (kb) 475 476 477Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 475.104 kb on + strand, within DvMF_0404at 475.238 kb on + strand, within DvMF_0404at 475.544 kb on - strand, within DvMF_0404at 476.013 kb on - strand, within DvMF_0405at 476.171 kb on - strand, within DvMF_0405at 476.394 kb on + strand, within DvMF_0405at 476.671 kb on - strand, within DvMF_0405at 476.759 kb on - strandat 476.844 kb on + strandat 476.988 kb on - strandat 477.550 kb on - strand, within DvMF_0406at 477.568 kb on + strand, within DvMF_0406at 477.576 kb on - strand, within DvMF_0406

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.125 mg/ml
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475,104 + DvMF_0404 0.39 -2.6
475,238 + DvMF_0404 0.52 -2.5
475,544 - DvMF_0404 0.82 -1.6
476,013 - DvMF_0405 0.14 -0.2
476,171 - DvMF_0405 0.31 -4.7
476,394 + DvMF_0405 0.54 -3.4
476,671 - DvMF_0405 0.82 -4.9
476,759 - -0.8
476,844 + -1.4
476,988 - -0.5
477,550 - DvMF_0406 0.59 -1.3
477,568 + DvMF_0406 0.61 -1.0
477,576 - DvMF_0406 0.61 -1.4

Or see this region's nucleotide sequence