Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0397

Experiment: MoYLS4 with Polymyxin B sulfate 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0396 and DvMF_0397 overlap by 8 nucleotidesDvMF_0397 and DvMF_0398 are separated by 423 nucleotides DvMF_0396: DvMF_0396 - iron-sulfur cluster binding protein (RefSeq), at 466,459 to 467,886 _0396 DvMF_0397: DvMF_0397 - protein of unknown function DUF224 cysteine-rich region domain protein (RefSeq), at 467,879 to 468,640 _0397 DvMF_0398: DvMF_0398 - short-chain dehydrogenase/reductase SDR (RefSeq), at 469,064 to 469,867 _0398 Position (kb) 467 468 469Strain fitness (log2 ratio) -2 -1 0 1at 466.909 kb on + strand, within DvMF_0396at 467.170 kb on + strand, within DvMF_0396at 467.356 kb on + strand, within DvMF_0396at 467.496 kb on + strand, within DvMF_0396at 467.596 kb on + strand, within DvMF_0396at 467.668 kb on - strand, within DvMF_0396at 467.843 kb on - strandat 467.881 kb on + strandat 468.414 kb on + strand, within DvMF_0397at 468.519 kb on - strand, within DvMF_0397at 468.530 kb on + strand, within DvMF_0397at 468.593 kb on - strandat 468.803 kb on - strandat 468.951 kb on + strandat 468.959 kb on - strandat 468.961 kb on + strandat 469.567 kb on - strand, within DvMF_0398

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.125 mg/ml
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466,909 + DvMF_0396 0.32 -2.3
467,170 + DvMF_0396 0.50 -0.6
467,356 + DvMF_0396 0.63 +0.3
467,496 + DvMF_0396 0.73 -0.1
467,596 + DvMF_0396 0.80 -0.2
467,668 - DvMF_0396 0.85 -0.4
467,843 - -0.6
467,881 + +0.2
468,414 + DvMF_0397 0.70 -1.0
468,519 - DvMF_0397 0.84 -0.7
468,530 + DvMF_0397 0.85 -0.4
468,593 - -1.2
468,803 - -0.4
468,951 + -0.0
468,959 - +0.0
468,961 + -0.6
469,567 - DvMF_0398 0.63 -0.8

Or see this region's nucleotide sequence