Experiment: MoYLS4 with Polymyxin B sulfate 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0353 and DvMF_0354 are separated by 96 nucleotides DvMF_0354 and DvMF_0355 are separated by 16 nucleotides DvMF_0355 and DvMF_0356 are separated by 461 nucleotides
DvMF_0353: DvMF_0353 - diaminopimelate decarboxylase (RefSeq), at 410,826 to 412,076
_0353
DvMF_0354: DvMF_0354 - hypothetical protein (RefSeq), at 412,173 to 412,694
_0354
DvMF_0355: DvMF_0355 - DNA mismatch repair protein MutS (RefSeq), at 412,711 to 415,443
_0355
DvMF_0356: DvMF_0356 - Tetratricopeptide TPR_4 (RefSeq), at 415,905 to 417,113
_0356
Position (kb) 412
413
414
415
416 Strain fitness (log2 ratio) -2
-1
0
1 at 411.894 kb on + strand, within DvMF_0353 at 411.995 kb on - strand at 412.093 kb on - strand at 412.120 kb on + strand at 412.253 kb on + strand, within DvMF_0354 at 412.260 kb on + strand, within DvMF_0354 at 412.260 kb on + strand, within DvMF_0354 at 412.789 kb on - strand at 412.826 kb on + strand at 412.834 kb on - strand at 412.959 kb on - strand at 412.987 kb on - strand, within DvMF_0355 at 413.286 kb on - strand, within DvMF_0355 at 413.441 kb on - strand, within DvMF_0355 at 413.520 kb on - strand, within DvMF_0355 at 413.666 kb on - strand, within DvMF_0355 at 413.851 kb on + strand, within DvMF_0355 at 413.862 kb on + strand, within DvMF_0355 at 414.012 kb on + strand, within DvMF_0355 at 414.133 kb on - strand, within DvMF_0355 at 414.174 kb on - strand, within DvMF_0355 at 414.179 kb on + strand, within DvMF_0355 at 414.228 kb on - strand, within DvMF_0355 at 414.245 kb on - strand, within DvMF_0355 at 414.342 kb on + strand, within DvMF_0355 at 414.423 kb on - strand, within DvMF_0355 at 414.478 kb on + strand, within DvMF_0355 at 414.613 kb on - strand, within DvMF_0355 at 414.745 kb on - strand, within DvMF_0355 at 414.750 kb on - strand, within DvMF_0355 at 414.813 kb on + strand, within DvMF_0355 at 414.888 kb on + strand, within DvMF_0355 at 414.896 kb on - strand, within DvMF_0355 at 414.908 kb on + strand, within DvMF_0355 at 414.932 kb on + strand, within DvMF_0355 at 415.064 kb on + strand, within DvMF_0355 at 415.064 kb on + strand, within DvMF_0355 at 415.072 kb on - strand, within DvMF_0355 at 415.107 kb on + strand, within DvMF_0355 at 415.125 kb on - strand, within DvMF_0355 at 415.212 kb on + strand at 415.298 kb on - strand at 415.312 kb on + strand at 415.441 kb on + strand at 415.746 kb on - strand at 415.819 kb on + strand at 415.827 kb on - strand at 415.827 kb on - strand at 415.893 kb on + strand at 415.901 kb on - strand at 415.972 kb on - strand at 415.974 kb on - strand at 416.237 kb on + strand, within DvMF_0356 at 416.415 kb on - strand, within DvMF_0356
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.125 mg/ml remove 411,894 + DvMF_0353 0.85 -0.8 411,995 - +0.0 412,093 - -0.7 412,120 + -0.5 412,253 + DvMF_0354 0.15 -1.8 412,260 + DvMF_0354 0.17 -1.2 412,260 + DvMF_0354 0.17 -1.4 412,789 - -1.0 412,826 + +0.9 412,834 - +0.6 412,959 - -0.2 412,987 - DvMF_0355 0.10 -0.2 413,286 - DvMF_0355 0.21 -0.4 413,441 - DvMF_0355 0.27 +0.4 413,520 - DvMF_0355 0.30 -0.1 413,666 - DvMF_0355 0.35 -0.6 413,851 + DvMF_0355 0.42 -0.0 413,862 + DvMF_0355 0.42 -0.6 414,012 + DvMF_0355 0.48 -1.1 414,133 - DvMF_0355 0.52 -0.1 414,174 - DvMF_0355 0.54 -0.9 414,179 + DvMF_0355 0.54 +0.5 414,228 - DvMF_0355 0.56 -0.8 414,245 - DvMF_0355 0.56 +1.4 414,342 + DvMF_0355 0.60 +0.3 414,423 - DvMF_0355 0.63 -0.3 414,478 + DvMF_0355 0.65 -1.0 414,613 - DvMF_0355 0.70 -0.3 414,745 - DvMF_0355 0.74 -0.2 414,750 - DvMF_0355 0.75 -0.4 414,813 + DvMF_0355 0.77 -0.5 414,888 + DvMF_0355 0.80 -1.4 414,896 - DvMF_0355 0.80 -0.7 414,908 + DvMF_0355 0.80 +0.1 414,932 + DvMF_0355 0.81 -0.7 415,064 + DvMF_0355 0.86 -1.3 415,064 + DvMF_0355 0.86 -0.1 415,072 - DvMF_0355 0.86 -0.3 415,107 + DvMF_0355 0.88 -1.0 415,125 - DvMF_0355 0.88 -0.4 415,212 + +0.2 415,298 - -0.6 415,312 + +0.1 415,441 + +0.2 415,746 - -1.1 415,819 + -0.7 415,827 - -0.6 415,827 - -0.3 415,893 + -0.9 415,901 - -0.9 415,972 - -0.7 415,974 - -1.0 416,237 + DvMF_0356 0.27 -0.7 416,415 - DvMF_0356 0.42 -1.5
Or see this region's nucleotide sequence