Experiment: MoYLS4 with Polymyxin B sulfate 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0010 and DvMF_0011 are separated by 2 nucleotides DvMF_0011 and DvMF_0012 are separated by 231 nucleotides
DvMF_0010: DvMF_0010 - diguanylate phosphodiesterase (RefSeq), at 13,084 to 14,547
_0010
DvMF_0011: DvMF_0011 - L-serine ammonia-lyase (EC 4.3.1.17) <small>(from data)</small>, at 14,550 to 15,929
_0011
DvMF_0012: DvMF_0012 - glyceraldehyde-3-phosphate dehydrogenase, type I (RefSeq), at 16,161 to 17,159
_0012
Position (kb) 14
15
16 Strain fitness (log2 ratio) -2
-1
0
1 at 13.581 kb on - strand, within DvMF_0010 at 13.585 kb on - strand, within DvMF_0010 at 13.762 kb on - strand, within DvMF_0010 at 13.771 kb on + strand, within DvMF_0010 at 13.819 kb on - strand, within DvMF_0010 at 13.819 kb on - strand, within DvMF_0010 at 13.970 kb on - strand, within DvMF_0010 at 14.039 kb on + strand, within DvMF_0010 at 14.201 kb on - strand, within DvMF_0010 at 14.213 kb on + strand, within DvMF_0010 at 14.218 kb on + strand, within DvMF_0010 at 14.233 kb on + strand, within DvMF_0010 at 14.238 kb on + strand, within DvMF_0010 at 14.366 kb on - strand, within DvMF_0010 at 14.468 kb on + strand at 14.691 kb on + strand, within DvMF_0011 at 14.798 kb on - strand, within DvMF_0011 at 14.846 kb on + strand, within DvMF_0011 at 14.854 kb on - strand, within DvMF_0011 at 14.924 kb on + strand, within DvMF_0011 at 14.990 kb on + strand, within DvMF_0011 at 15.002 kb on + strand, within DvMF_0011 at 15.032 kb on + strand, within DvMF_0011 at 15.093 kb on - strand, within DvMF_0011 at 15.323 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.452 kb on + strand, within DvMF_0011 at 15.460 kb on - strand, within DvMF_0011 at 15.572 kb on - strand, within DvMF_0011 at 15.701 kb on - strand, within DvMF_0011 at 15.769 kb on - strand, within DvMF_0011 at 15.801 kb on + strand at 15.921 kb on - strand at 16.019 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Polymyxin B sulfate 0.125 mg/ml remove 13,581 - DvMF_0010 0.34 +1.6 13,585 - DvMF_0010 0.34 +0.9 13,762 - DvMF_0010 0.46 +1.7 13,771 + DvMF_0010 0.47 +1.0 13,819 - DvMF_0010 0.50 +0.8 13,819 - DvMF_0010 0.50 +0.9 13,970 - DvMF_0010 0.61 +0.7 14,039 + DvMF_0010 0.65 +1.2 14,201 - DvMF_0010 0.76 +0.5 14,213 + DvMF_0010 0.77 +0.6 14,218 + DvMF_0010 0.77 +0.2 14,233 + DvMF_0010 0.78 +0.5 14,238 + DvMF_0010 0.79 +0.5 14,366 - DvMF_0010 0.88 +1.3 14,468 + +1.2 14,691 + DvMF_0011 0.10 -0.4 14,798 - DvMF_0011 0.18 -0.8 14,846 + DvMF_0011 0.21 -1.6 14,854 - DvMF_0011 0.22 -0.1 14,924 + DvMF_0011 0.27 -0.4 14,990 + DvMF_0011 0.32 -0.2 15,002 + DvMF_0011 0.33 -0.3 15,032 + DvMF_0011 0.35 -0.3 15,093 - DvMF_0011 0.39 -2.2 15,323 + DvMF_0011 0.56 -0.8 15,452 + DvMF_0011 0.65 -1.1 15,452 + DvMF_0011 0.65 -0.8 15,452 + DvMF_0011 0.65 +0.3 15,452 + DvMF_0011 0.65 -1.3 15,452 + DvMF_0011 0.65 -0.4 15,460 - DvMF_0011 0.66 -0.3 15,572 - DvMF_0011 0.74 -0.0 15,701 - DvMF_0011 0.83 -0.8 15,769 - DvMF_0011 0.88 -0.3 15,801 + +0.3 15,921 - -0.3 16,019 - -0.7
Or see this region's nucleotide sequence