Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3657 and Shewana3_3658 are separated by 75 nucleotides Shewana3_3658 and Shewana3_3659 are separated by 38 nucleotides Shewana3_3659 and Shewana3_3660 are separated by 2 nucleotides
Shewana3_3657: Shewana3_3657 - methylation site containing protein (RefSeq), at 4,393,632 to 4,394,249
_3657
Shewana3_3658: Shewana3_3658 - hypothetical protein (RefSeq), at 4,394,325 to 4,394,822
_3658
Shewana3_3659: Shewana3_3659 - type II secretion system protein (RefSeq), at 4,394,861 to 4,396,081
_3659
Shewana3_3660: Shewana3_3660 - type II secretion system protein E (RefSeq), at 4,396,084 to 4,397,844
_3660
Position (kb)
4394
4395
4396
4397 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4393.861 kb on + strand, within Shewana3_3657 at 4393.861 kb on + strand, within Shewana3_3657 at 4393.867 kb on - strand, within Shewana3_3657 at 4393.869 kb on - strand, within Shewana3_3657 at 4394.127 kb on + strand, within Shewana3_3657 at 4394.406 kb on + strand, within Shewana3_3658 at 4394.407 kb on + strand, within Shewana3_3658 at 4394.414 kb on - strand, within Shewana3_3658 at 4394.558 kb on + strand, within Shewana3_3658 at 4394.654 kb on + strand, within Shewana3_3658 at 4394.699 kb on + strand, within Shewana3_3658 at 4394.783 kb on - strand at 4394.907 kb on + strand at 4394.915 kb on - strand at 4395.007 kb on - strand, within Shewana3_3659 at 4395.127 kb on - strand, within Shewana3_3659 at 4395.474 kb on + strand, within Shewana3_3659 at 4395.567 kb on + strand, within Shewana3_3659 at 4395.624 kb on + strand, within Shewana3_3659 at 4395.832 kb on + strand, within Shewana3_3659 at 4395.935 kb on - strand, within Shewana3_3659 at 4396.089 kb on + strand at 4396.224 kb on + strand at 4396.426 kb on - strand, within Shewana3_3660 at 4396.438 kb on - strand, within Shewana3_3660 at 4396.450 kb on - strand, within Shewana3_3660 at 4396.602 kb on + strand, within Shewana3_3660 at 4396.885 kb on + strand, within Shewana3_3660 at 4396.961 kb on - strand, within Shewana3_3660
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 4,393,861 + Shewana3_3657 0.37 +0.2 4,393,861 + Shewana3_3657 0.37 -0.8 4,393,867 - Shewana3_3657 0.38 +0.5 4,393,869 - Shewana3_3657 0.38 -1.1 4,394,127 + Shewana3_3657 0.80 +0.3 4,394,406 + Shewana3_3658 0.16 -0.7 4,394,407 + Shewana3_3658 0.16 -0.5 4,394,414 - Shewana3_3658 0.18 +0.5 4,394,558 + Shewana3_3658 0.47 -4.0 4,394,654 + Shewana3_3658 0.66 -0.2 4,394,699 + Shewana3_3658 0.75 +0.6 4,394,783 - -0.8 4,394,907 + +0.7 4,394,915 - +0.1 4,395,007 - Shewana3_3659 0.12 +0.3 4,395,127 - Shewana3_3659 0.22 -0.1 4,395,474 + Shewana3_3659 0.50 +0.6 4,395,567 + Shewana3_3659 0.58 +1.2 4,395,624 + Shewana3_3659 0.62 +0.2 4,395,832 + Shewana3_3659 0.80 +0.2 4,395,935 - Shewana3_3659 0.88 +0.7 4,396,089 + +0.6 4,396,224 + -3.0 4,396,426 - Shewana3_3660 0.19 -0.6 4,396,438 - Shewana3_3660 0.20 -0.8 4,396,450 - Shewana3_3660 0.21 +0.6 4,396,602 + Shewana3_3660 0.29 +0.2 4,396,885 + Shewana3_3660 0.45 -1.5 4,396,961 - Shewana3_3660 0.50 -0.8
Or see this region's nucleotide sequence