Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3368 and Shewana3_3369 are separated by 221 nucleotides Shewana3_3369 and Shewana3_3370 are separated by 120 nucleotides
Shewana3_3368: Shewana3_3368 - MarR family transcriptional regulator (RefSeq), at 4,039,495 to 4,040,517
_3368
Shewana3_3369: Shewana3_3369 - beta-lactamase (RefSeq), at 4,040,739 to 4,041,932
_3369
Shewana3_3370: Shewana3_3370 - hypothetical protein (RefSeq), at 4,042,053 to 4,042,370
_3370
Position (kb)
4040
4041
4042 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4039.938 kb on + strand, within Shewana3_3368 at 4040.116 kb on + strand, within Shewana3_3368 at 4040.124 kb on - strand, within Shewana3_3368 at 4040.162 kb on + strand, within Shewana3_3368 at 4040.284 kb on + strand, within Shewana3_3368 at 4040.329 kb on + strand, within Shewana3_3368 at 4040.378 kb on + strand, within Shewana3_3368 at 4040.641 kb on - strand at 4040.657 kb on - strand at 4040.737 kb on + strand at 4040.737 kb on + strand at 4040.738 kb on + strand at 4040.738 kb on + strand at 4040.746 kb on - strand at 4040.868 kb on + strand, within Shewana3_3369 at 4041.233 kb on + strand, within Shewana3_3369 at 4041.241 kb on - strand, within Shewana3_3369 at 4041.294 kb on + strand, within Shewana3_3369 at 4041.322 kb on + strand, within Shewana3_3369 at 4041.412 kb on + strand, within Shewana3_3369 at 4041.417 kb on + strand, within Shewana3_3369 at 4041.444 kb on - strand, within Shewana3_3369 at 4041.799 kb on - strand, within Shewana3_3369 at 4041.993 kb on + strand at 4041.999 kb on + strand at 4042.007 kb on - strand at 4042.007 kb on - strand at 4042.150 kb on + strand, within Shewana3_3370 at 4042.230 kb on - strand, within Shewana3_3370 at 4042.384 kb on - strand at 4042.510 kb on - strand at 4042.630 kb on - strand at 4042.630 kb on - strand at 4042.667 kb on - strand at 4042.847 kb on + strand at 4042.892 kb on + strand at 4042.897 kb on + strand at 4042.897 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 4,039,938 + Shewana3_3368 0.43 -0.1 4,040,116 + Shewana3_3368 0.61 -1.1 4,040,124 - Shewana3_3368 0.61 +0.8 4,040,162 + Shewana3_3368 0.65 -0.5 4,040,284 + Shewana3_3368 0.77 -1.2 4,040,329 + Shewana3_3368 0.82 -3.2 4,040,378 + Shewana3_3368 0.86 +0.4 4,040,641 - -1.5 4,040,657 - -0.3 4,040,737 + +0.5 4,040,737 + +0.9 4,040,738 + +1.1 4,040,738 + +1.0 4,040,746 - -0.7 4,040,868 + Shewana3_3369 0.11 +0.1 4,041,233 + Shewana3_3369 0.41 +0.2 4,041,241 - Shewana3_3369 0.42 -2.6 4,041,294 + Shewana3_3369 0.46 +0.4 4,041,322 + Shewana3_3369 0.49 +0.6 4,041,412 + Shewana3_3369 0.56 +1.3 4,041,417 + Shewana3_3369 0.57 +0.9 4,041,444 - Shewana3_3369 0.59 -0.2 4,041,799 - Shewana3_3369 0.89 +0.2 4,041,993 + +0.6 4,041,999 + +1.1 4,042,007 - +0.5 4,042,007 - -1.2 4,042,150 + Shewana3_3370 0.31 +0.2 4,042,230 - Shewana3_3370 0.56 +0.9 4,042,384 - -0.5 4,042,510 - +0.8 4,042,630 - +0.4 4,042,630 - +0.2 4,042,667 - -0.1 4,042,847 + +0.8 4,042,892 + +0.2 4,042,897 + +0.6 4,042,897 - -1.3
Or see this region's nucleotide sequence