Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3267 and Shewana3_3268 are separated by 536 nucleotides Shewana3_3268 and Shewana3_3269 are separated by 53 nucleotides Shewana3_3269 and Shewana3_3270 are separated by 44 nucleotides Shewana3_3270 and Shewana3_3271 are separated by 10 nucleotides
Shewana3_3267: Shewana3_3267 - hypothetical protein (RefSeq), at 3,909,407 to 3,909,631
_3267
Shewana3_3268: Shewana3_3268 - hypothetical protein (RefSeq), at 3,910,168 to 3,910,290
_3268
Shewana3_3269: Shewana3_3269 - hypothetical protein (RefSeq), at 3,910,344 to 3,910,727
_3269
Shewana3_3270: Shewana3_3270 - GCN5-related N-acetyltransferase (RefSeq), at 3,910,772 to 3,911,167
_3270
Shewana3_3271: Shewana3_3271 - cell division protein ZipA (RefSeq), at 3,911,178 to 3,911,732
_3271
Position (kb)
3910
3911 Strain fitness (log2 ratio)
-2
-1
0
1 at 3909.414 kb on + strand at 3909.414 kb on + strand at 3909.494 kb on - strand, within Shewana3_3267 at 3909.799 kb on + strand at 3909.968 kb on + strand at 3910.143 kb on + strand at 3910.205 kb on + strand, within Shewana3_3268 at 3910.208 kb on + strand, within Shewana3_3268 at 3910.390 kb on + strand, within Shewana3_3269 at 3910.506 kb on + strand, within Shewana3_3269 at 3910.650 kb on - strand, within Shewana3_3269 at 3910.684 kb on + strand, within Shewana3_3269 at 3910.718 kb on - strand at 3910.758 kb on + strand at 3911.182 kb on - strand at 3911.272 kb on + strand, within Shewana3_3271 at 3911.444 kb on + strand, within Shewana3_3271 at 3911.452 kb on - strand, within Shewana3_3271 at 3911.599 kb on - strand, within Shewana3_3271 at 3911.604 kb on - strand, within Shewana3_3271 at 3911.604 kb on - strand, within Shewana3_3271 at 3911.604 kb on - strand, within Shewana3_3271 at 3911.604 kb on - strand, within Shewana3_3271 at 3911.654 kb on + strand, within Shewana3_3271
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 3,909,414 + -0.3 3,909,414 + -1.9 3,909,494 - Shewana3_3267 0.39 +1.3 3,909,799 + +0.9 3,909,968 + +0.2 3,910,143 + -0.3 3,910,205 + Shewana3_3268 0.30 +0.5 3,910,208 + Shewana3_3268 0.33 +0.3 3,910,390 + Shewana3_3269 0.12 +1.5 3,910,506 + Shewana3_3269 0.42 +1.2 3,910,650 - Shewana3_3269 0.80 -0.4 3,910,684 + Shewana3_3269 0.89 +0.3 3,910,718 - +0.7 3,910,758 + +0.6 3,911,182 - +0.1 3,911,272 + Shewana3_3271 0.17 -0.3 3,911,444 + Shewana3_3271 0.48 +0.9 3,911,452 - Shewana3_3271 0.49 -1.6 3,911,599 - Shewana3_3271 0.76 -0.4 3,911,604 - Shewana3_3271 0.77 +0.3 3,911,604 - Shewana3_3271 0.77 +0.9 3,911,604 - Shewana3_3271 0.77 +0.9 3,911,604 - Shewana3_3271 0.77 +0.9 3,911,654 + Shewana3_3271 0.86 -0.6
Or see this region's nucleotide sequence