Strain Fitness in Shewanella sp. ANA-3 around Shewana3_3269

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_3267 and Shewana3_3268 are separated by 536 nucleotidesShewana3_3268 and Shewana3_3269 are separated by 53 nucleotidesShewana3_3269 and Shewana3_3270 are separated by 44 nucleotidesShewana3_3270 and Shewana3_3271 are separated by 10 nucleotides Shewana3_3267: Shewana3_3267 - hypothetical protein (RefSeq), at 3,909,407 to 3,909,631 _3267 Shewana3_3268: Shewana3_3268 - hypothetical protein (RefSeq), at 3,910,168 to 3,910,290 _3268 Shewana3_3269: Shewana3_3269 - hypothetical protein (RefSeq), at 3,910,344 to 3,910,727 _3269 Shewana3_3270: Shewana3_3270 - GCN5-related N-acetyltransferase (RefSeq), at 3,910,772 to 3,911,167 _3270 Shewana3_3271: Shewana3_3271 - cell division protein ZipA (RefSeq), at 3,911,178 to 3,911,732 _3271 Position (kb) 3910 3911Strain fitness (log2 ratio) -2 -1 0 1at 3909.414 kb on + strandat 3909.414 kb on + strandat 3909.494 kb on - strand, within Shewana3_3267at 3909.799 kb on + strandat 3909.968 kb on + strandat 3910.143 kb on + strandat 3910.205 kb on + strand, within Shewana3_3268at 3910.208 kb on + strand, within Shewana3_3268at 3910.390 kb on + strand, within Shewana3_3269at 3910.506 kb on + strand, within Shewana3_3269at 3910.650 kb on - strand, within Shewana3_3269at 3910.684 kb on + strand, within Shewana3_3269at 3910.718 kb on - strandat 3910.758 kb on + strandat 3911.182 kb on - strandat 3911.272 kb on + strand, within Shewana3_3271at 3911.444 kb on + strand, within Shewana3_3271at 3911.452 kb on - strand, within Shewana3_3271at 3911.599 kb on - strand, within Shewana3_3271at 3911.604 kb on - strand, within Shewana3_3271at 3911.604 kb on - strand, within Shewana3_3271at 3911.604 kb on - strand, within Shewana3_3271at 3911.604 kb on - strand, within Shewana3_3271at 3911.654 kb on + strand, within Shewana3_3271

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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3,909,414 + -0.3
3,909,414 + -1.9
3,909,494 - Shewana3_3267 0.39 +1.3
3,909,799 + +0.9
3,909,968 + +0.2
3,910,143 + -0.3
3,910,205 + Shewana3_3268 0.30 +0.5
3,910,208 + Shewana3_3268 0.33 +0.3
3,910,390 + Shewana3_3269 0.12 +1.5
3,910,506 + Shewana3_3269 0.42 +1.2
3,910,650 - Shewana3_3269 0.80 -0.4
3,910,684 + Shewana3_3269 0.89 +0.3
3,910,718 - +0.7
3,910,758 + +0.6
3,911,182 - +0.1
3,911,272 + Shewana3_3271 0.17 -0.3
3,911,444 + Shewana3_3271 0.48 +0.9
3,911,452 - Shewana3_3271 0.49 -1.6
3,911,599 - Shewana3_3271 0.76 -0.4
3,911,604 - Shewana3_3271 0.77 +0.3
3,911,604 - Shewana3_3271 0.77 +0.9
3,911,604 - Shewana3_3271 0.77 +0.9
3,911,604 - Shewana3_3271 0.77 +0.9
3,911,654 + Shewana3_3271 0.86 -0.6

Or see this region's nucleotide sequence