Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2794

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2793 and Shewana3_2794 are separated by 37 nucleotidesShewana3_2794 and Shewana3_2795 are separated by 74 nucleotides Shewana3_2793: Shewana3_2793 - dTDP-4-dehydrorhamnose reductase (RefSeq), at 3,332,138 to 3,333,232 _2793 Shewana3_2794: Shewana3_2794 - putative hydrolase (RefSeq), at 3,333,270 to 3,334,028 _2794 Shewana3_2795: Shewana3_2795 - SNF2-related protein (RefSeq), at 3,334,103 to 3,337,351 _2795 Position (kb) 3333 3334 3335Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3332.278 kb on + strand, within Shewana3_2793at 3332.431 kb on + strand, within Shewana3_2793at 3332.639 kb on - strand, within Shewana3_2793at 3332.644 kb on - strand, within Shewana3_2793at 3332.653 kb on + strand, within Shewana3_2793at 3332.688 kb on + strand, within Shewana3_2793at 3332.732 kb on - strand, within Shewana3_2793at 3332.809 kb on + strand, within Shewana3_2793at 3332.935 kb on + strand, within Shewana3_2793at 3332.966 kb on - strand, within Shewana3_2793at 3333.079 kb on + strand, within Shewana3_2793at 3333.093 kb on - strand, within Shewana3_2793at 3333.137 kb on + strandat 3333.156 kb on + strandat 3333.185 kb on + strandat 3333.321 kb on - strandat 3333.337 kb on + strandat 3333.469 kb on - strand, within Shewana3_2794at 3334.009 kb on - strandat 3334.023 kb on - strandat 3334.043 kb on - strandat 3334.043 kb on - strandat 3334.068 kb on - strandat 3334.389 kb on - strandat 3334.389 kb on - strandat 3334.795 kb on + strand, within Shewana3_2795at 3334.887 kb on + strand, within Shewana3_2795

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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3,332,278 + Shewana3_2793 0.13 -0.3
3,332,431 + Shewana3_2793 0.27 +0.4
3,332,639 - Shewana3_2793 0.46 +0.3
3,332,644 - Shewana3_2793 0.46 +0.7
3,332,653 + Shewana3_2793 0.47 -5.2
3,332,688 + Shewana3_2793 0.50 +0.6
3,332,732 - Shewana3_2793 0.54 +0.2
3,332,809 + Shewana3_2793 0.61 -1.2
3,332,935 + Shewana3_2793 0.73 +1.5
3,332,966 - Shewana3_2793 0.76 +0.1
3,333,079 + Shewana3_2793 0.86 -0.9
3,333,093 - Shewana3_2793 0.87 +0.3
3,333,137 + +1.1
3,333,156 + +0.1
3,333,185 + +0.6
3,333,321 - +0.5
3,333,337 + +0.6
3,333,469 - Shewana3_2794 0.26 -1.1
3,334,009 - +0.4
3,334,023 - +0.3
3,334,043 - +0.9
3,334,043 - +0.2
3,334,068 - -0.6
3,334,389 - +0.3
3,334,389 - -0.4
3,334,795 + Shewana3_2795 0.21 +0.8
3,334,887 + Shewana3_2795 0.24 +1.0

Or see this region's nucleotide sequence