Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2790 and Shewana3_2791 are separated by 62 nucleotides Shewana3_2791 and Shewana3_2792 overlap by 11 nucleotides Shewana3_2792 and Shewana3_2793 are separated by 61 nucleotides
Shewana3_2790: Shewana3_2790 - fructokinase (RefSeq), at 3,330,001 to 3,330,921
_2790
Shewana3_2791: Shewana3_2791 - 3'(2'),5'-bisphosphate nucleotidase (RefSeq), at 3,330,984 to 3,331,790
_2791
Shewana3_2792: Shewana3_2792 - hypothetical protein (RefSeq), at 3,331,780 to 3,332,076
_2792
Shewana3_2793: Shewana3_2793 - dTDP-4-dehydrorhamnose reductase (RefSeq), at 3,332,138 to 3,333,232
_2793
Position (kb)
3330
3331
3332 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 3330.054 kb on - strand at 3330.117 kb on + strand, within Shewana3_2790 at 3330.125 kb on - strand, within Shewana3_2790 at 3330.325 kb on + strand, within Shewana3_2790 at 3330.421 kb on - strand, within Shewana3_2790 at 3330.624 kb on + strand, within Shewana3_2790 at 3331.004 kb on - strand at 3331.064 kb on - strand at 3331.165 kb on + strand, within Shewana3_2791 at 3331.173 kb on - strand, within Shewana3_2791 at 3331.916 kb on - strand, within Shewana3_2792 at 3332.130 kb on + strand at 3332.180 kb on - strand at 3332.211 kb on - strand at 3332.245 kb on - strand at 3332.278 kb on + strand, within Shewana3_2793 at 3332.431 kb on + strand, within Shewana3_2793 at 3332.639 kb on - strand, within Shewana3_2793 at 3332.644 kb on - strand, within Shewana3_2793 at 3332.653 kb on + strand, within Shewana3_2793 at 3332.688 kb on + strand, within Shewana3_2793 at 3332.732 kb on - strand, within Shewana3_2793
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 3,330,054 - -0.3 3,330,117 + Shewana3_2790 0.13 -0.1 3,330,125 - Shewana3_2790 0.13 +0.2 3,330,325 + Shewana3_2790 0.35 -0.3 3,330,421 - Shewana3_2790 0.46 -0.2 3,330,624 + Shewana3_2790 0.68 -1.1 3,331,004 - -0.3 3,331,064 - -2.3 3,331,165 + Shewana3_2791 0.22 -4.0 3,331,173 - Shewana3_2791 0.23 -3.0 3,331,916 - Shewana3_2792 0.46 +0.2 3,332,130 + +0.5 3,332,180 - +0.5 3,332,211 - -0.7 3,332,245 - -0.3 3,332,278 + Shewana3_2793 0.13 -0.3 3,332,431 + Shewana3_2793 0.27 +0.4 3,332,639 - Shewana3_2793 0.46 +0.3 3,332,644 - Shewana3_2793 0.46 +0.7 3,332,653 + Shewana3_2793 0.47 -5.2 3,332,688 + Shewana3_2793 0.50 +0.6 3,332,732 - Shewana3_2793 0.54 +0.2
Or see this region's nucleotide sequence