Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2749 and Shewana3_2750 overlap by 4 nucleotides Shewana3_2750 and Shewana3_2751 overlap by 1 nucleotides Shewana3_2751 and Shewana3_2752 are separated by 175 nucleotides
Shewana3_2749: Shewana3_2749 - ABC transporter related (RefSeq), at 3,280,781 to 3,281,821
_2749
Shewana3_2750: Shewana3_2750 - secretion protein HlyD family protein (RefSeq), at 3,281,818 to 3,282,831
_2750
Shewana3_2751: Shewana3_2751 - TetR family transcriptional regulator (RefSeq), at 3,282,831 to 3,283,529
_2751
Shewana3_2752: Shewana3_2752 - hypothetical protein (RefSeq), at 3,283,705 to 3,284,073
_2752
Position (kb)
3281
3282
3283 Strain fitness (log2 ratio)
-1
0
1 at 3281.152 kb on + strand, within Shewana3_2749 at 3281.387 kb on + strand, within Shewana3_2749 at 3281.470 kb on + strand, within Shewana3_2749 at 3281.573 kb on + strand, within Shewana3_2749 at 3281.613 kb on + strand, within Shewana3_2749 at 3281.807 kb on + strand at 3281.840 kb on - strand at 3282.148 kb on + strand, within Shewana3_2750 at 3282.247 kb on - strand, within Shewana3_2750 at 3282.285 kb on + strand, within Shewana3_2750 at 3282.285 kb on + strand, within Shewana3_2750 at 3282.285 kb on + strand, within Shewana3_2750 at 3282.292 kb on + strand, within Shewana3_2750 at 3282.293 kb on - strand, within Shewana3_2750 at 3282.293 kb on - strand, within Shewana3_2750 at 3282.293 kb on - strand, within Shewana3_2750 at 3282.305 kb on - strand, within Shewana3_2750 at 3282.372 kb on - strand, within Shewana3_2750 at 3282.442 kb on + strand, within Shewana3_2750 at 3282.511 kb on - strand, within Shewana3_2750 at 3282.665 kb on - strand, within Shewana3_2750 at 3282.665 kb on - strand, within Shewana3_2750 at 3282.837 kb on + strand at 3282.846 kb on - strand at 3282.895 kb on - strand at 3283.200 kb on - strand, within Shewana3_2751 at 3283.265 kb on + strand, within Shewana3_2751 at 3283.308 kb on - strand, within Shewana3_2751 at 3283.441 kb on - strand, within Shewana3_2751 at 3283.653 kb on - strand at 3283.812 kb on - strand, within Shewana3_2752
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 3,281,152 + Shewana3_2749 0.36 +0.2 3,281,387 + Shewana3_2749 0.58 +0.1 3,281,470 + Shewana3_2749 0.66 -0.1 3,281,573 + Shewana3_2749 0.76 -0.3 3,281,613 + Shewana3_2749 0.80 -0.4 3,281,807 + -0.4 3,281,840 - +1.1 3,282,148 + Shewana3_2750 0.33 -1.6 3,282,247 - Shewana3_2750 0.42 +0.0 3,282,285 + Shewana3_2750 0.46 +0.1 3,282,285 + Shewana3_2750 0.46 -0.5 3,282,285 + Shewana3_2750 0.46 -0.3 3,282,292 + Shewana3_2750 0.47 -1.0 3,282,293 - Shewana3_2750 0.47 -0.3 3,282,293 - Shewana3_2750 0.47 -1.6 3,282,293 - Shewana3_2750 0.47 -1.0 3,282,305 - Shewana3_2750 0.48 +0.7 3,282,372 - Shewana3_2750 0.55 -0.7 3,282,442 + Shewana3_2750 0.62 -0.3 3,282,511 - Shewana3_2750 0.68 +1.0 3,282,665 - Shewana3_2750 0.84 +0.1 3,282,665 - Shewana3_2750 0.84 +0.3 3,282,837 + -0.2 3,282,846 - +0.3 3,282,895 - +1.0 3,283,200 - Shewana3_2751 0.53 +0.0 3,283,265 + Shewana3_2751 0.62 -0.3 3,283,308 - Shewana3_2751 0.68 +0.9 3,283,441 - Shewana3_2751 0.87 +1.0 3,283,653 - +0.4 3,283,812 - Shewana3_2752 0.29 +0.9
Or see this region's nucleotide sequence