Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2750

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2749 and Shewana3_2750 overlap by 4 nucleotidesShewana3_2750 and Shewana3_2751 overlap by 1 nucleotidesShewana3_2751 and Shewana3_2752 are separated by 175 nucleotides Shewana3_2749: Shewana3_2749 - ABC transporter related (RefSeq), at 3,280,781 to 3,281,821 _2749 Shewana3_2750: Shewana3_2750 - secretion protein HlyD family protein (RefSeq), at 3,281,818 to 3,282,831 _2750 Shewana3_2751: Shewana3_2751 - TetR family transcriptional regulator (RefSeq), at 3,282,831 to 3,283,529 _2751 Shewana3_2752: Shewana3_2752 - hypothetical protein (RefSeq), at 3,283,705 to 3,284,073 _2752 Position (kb) 3281 3282 3283Strain fitness (log2 ratio) -1 0 1at 3281.152 kb on + strand, within Shewana3_2749at 3281.387 kb on + strand, within Shewana3_2749at 3281.470 kb on + strand, within Shewana3_2749at 3281.573 kb on + strand, within Shewana3_2749at 3281.613 kb on + strand, within Shewana3_2749at 3281.807 kb on + strandat 3281.840 kb on - strandat 3282.148 kb on + strand, within Shewana3_2750at 3282.247 kb on - strand, within Shewana3_2750at 3282.285 kb on + strand, within Shewana3_2750at 3282.285 kb on + strand, within Shewana3_2750at 3282.285 kb on + strand, within Shewana3_2750at 3282.292 kb on + strand, within Shewana3_2750at 3282.293 kb on - strand, within Shewana3_2750at 3282.293 kb on - strand, within Shewana3_2750at 3282.293 kb on - strand, within Shewana3_2750at 3282.305 kb on - strand, within Shewana3_2750at 3282.372 kb on - strand, within Shewana3_2750at 3282.442 kb on + strand, within Shewana3_2750at 3282.511 kb on - strand, within Shewana3_2750at 3282.665 kb on - strand, within Shewana3_2750at 3282.665 kb on - strand, within Shewana3_2750at 3282.837 kb on + strandat 3282.846 kb on - strandat 3282.895 kb on - strandat 3283.200 kb on - strand, within Shewana3_2751at 3283.265 kb on + strand, within Shewana3_2751at 3283.308 kb on - strand, within Shewana3_2751at 3283.441 kb on - strand, within Shewana3_2751at 3283.653 kb on - strandat 3283.812 kb on - strand, within Shewana3_2752

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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3,281,152 + Shewana3_2749 0.36 +0.2
3,281,387 + Shewana3_2749 0.58 +0.1
3,281,470 + Shewana3_2749 0.66 -0.1
3,281,573 + Shewana3_2749 0.76 -0.3
3,281,613 + Shewana3_2749 0.80 -0.4
3,281,807 + -0.4
3,281,840 - +1.1
3,282,148 + Shewana3_2750 0.33 -1.6
3,282,247 - Shewana3_2750 0.42 +0.0
3,282,285 + Shewana3_2750 0.46 +0.1
3,282,285 + Shewana3_2750 0.46 -0.5
3,282,285 + Shewana3_2750 0.46 -0.3
3,282,292 + Shewana3_2750 0.47 -1.0
3,282,293 - Shewana3_2750 0.47 -0.3
3,282,293 - Shewana3_2750 0.47 -1.6
3,282,293 - Shewana3_2750 0.47 -1.0
3,282,305 - Shewana3_2750 0.48 +0.7
3,282,372 - Shewana3_2750 0.55 -0.7
3,282,442 + Shewana3_2750 0.62 -0.3
3,282,511 - Shewana3_2750 0.68 +1.0
3,282,665 - Shewana3_2750 0.84 +0.1
3,282,665 - Shewana3_2750 0.84 +0.3
3,282,837 + -0.2
3,282,846 - +0.3
3,282,895 - +1.0
3,283,200 - Shewana3_2751 0.53 +0.0
3,283,265 + Shewana3_2751 0.62 -0.3
3,283,308 - Shewana3_2751 0.68 +0.9
3,283,441 - Shewana3_2751 0.87 +1.0
3,283,653 - +0.4
3,283,812 - Shewana3_2752 0.29 +0.9

Or see this region's nucleotide sequence