Experiment: Inosine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_2705 and Shewana3_2706 are separated by 171 nucleotides Shewana3_2706 and Shewana3_2707 are separated by 152 nucleotides Shewana3_2707 and Shewana3_2708 are separated by 272 nucleotides
Shewana3_2705: Shewana3_2705 - transcription activator, effector binding (RefSeq), at 3,233,980 to 3,234,429
_2705
Shewana3_2706: Shewana3_2706 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,234,601 to 3,234,984
_2706
Shewana3_2707: Shewana3_2707 - phosphoglucomutase/phosphomannomutase alpha/beta/subunit (RefSeq), at 3,235,137 to 3,236,858
_2707
Shewana3_2708: Shewana3_2708 - hypothetical protein (RefSeq), at 3,237,131 to 3,237,436
_2708
Position (kb)
3235
3236
3237 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3234.190 kb on - strand, within Shewana3_2705 at 3234.274 kb on - strand, within Shewana3_2705 at 3234.426 kb on + strand at 3234.765 kb on + strand, within Shewana3_2706 at 3234.853 kb on - strand, within Shewana3_2706 at 3235.068 kb on - strand at 3235.200 kb on - strand at 3235.410 kb on - strand, within Shewana3_2707 at 3235.548 kb on - strand, within Shewana3_2707 at 3235.635 kb on + strand, within Shewana3_2707 at 3235.658 kb on - strand, within Shewana3_2707 at 3235.703 kb on - strand, within Shewana3_2707 at 3235.812 kb on - strand, within Shewana3_2707 at 3235.868 kb on - strand, within Shewana3_2707 at 3235.907 kb on - strand, within Shewana3_2707 at 3235.954 kb on - strand, within Shewana3_2707 at 3236.077 kb on + strand, within Shewana3_2707 at 3236.179 kb on + strand, within Shewana3_2707 at 3236.264 kb on + strand, within Shewana3_2707 at 3236.504 kb on + strand, within Shewana3_2707 at 3236.504 kb on + strand, within Shewana3_2707 at 3236.580 kb on + strand, within Shewana3_2707 at 3236.620 kb on + strand, within Shewana3_2707 at 3236.686 kb on + strand at 3236.694 kb on - strand at 3236.981 kb on + strand at 3236.988 kb on - strand at 3237.025 kb on - strand at 3237.092 kb on - strand at 3237.116 kb on - strand at 3237.435 kb on - strand at 3237.463 kb on - strand at 3237.642 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine (C) remove 3,234,190 - Shewana3_2705 0.47 -0.5 3,234,274 - Shewana3_2705 0.65 -0.3 3,234,426 + -0.4 3,234,765 + Shewana3_2706 0.43 -0.2 3,234,853 - Shewana3_2706 0.66 -0.2 3,235,068 - -1.2 3,235,200 - -2.8 3,235,410 - Shewana3_2707 0.16 -2.2 3,235,548 - Shewana3_2707 0.24 -2.8 3,235,635 + Shewana3_2707 0.29 +0.7 3,235,658 - Shewana3_2707 0.30 -2.1 3,235,703 - Shewana3_2707 0.33 -3.6 3,235,812 - Shewana3_2707 0.39 -1.6 3,235,868 - Shewana3_2707 0.42 -3.1 3,235,907 - Shewana3_2707 0.45 -2.1 3,235,954 - Shewana3_2707 0.47 -2.0 3,236,077 + Shewana3_2707 0.55 -2.7 3,236,179 + Shewana3_2707 0.61 -2.8 3,236,264 + Shewana3_2707 0.65 +0.7 3,236,504 + Shewana3_2707 0.79 -1.5 3,236,504 + Shewana3_2707 0.79 -2.7 3,236,580 + Shewana3_2707 0.84 -1.9 3,236,620 + Shewana3_2707 0.86 -2.5 3,236,686 + -3.8 3,236,694 - -3.5 3,236,981 + -0.2 3,236,988 - -0.7 3,237,025 - -0.2 3,237,092 - -1.0 3,237,116 - -0.1 3,237,435 - +0.3 3,237,463 - +0.6 3,237,642 + +0.7
Or see this region's nucleotide sequence