Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2707

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_2705 and Shewana3_2706 are separated by 171 nucleotidesShewana3_2706 and Shewana3_2707 are separated by 152 nucleotidesShewana3_2707 and Shewana3_2708 are separated by 272 nucleotides Shewana3_2705: Shewana3_2705 - transcription activator, effector binding (RefSeq), at 3,233,980 to 3,234,429 _2705 Shewana3_2706: Shewana3_2706 - glyoxalase/bleomycin resistance protein/dioxygenase (RefSeq), at 3,234,601 to 3,234,984 _2706 Shewana3_2707: Shewana3_2707 - phosphoglucomutase/phosphomannomutase alpha/beta/subunit (RefSeq), at 3,235,137 to 3,236,858 _2707 Shewana3_2708: Shewana3_2708 - hypothetical protein (RefSeq), at 3,237,131 to 3,237,436 _2708 Position (kb) 3235 3236 3237Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3234.190 kb on - strand, within Shewana3_2705at 3234.274 kb on - strand, within Shewana3_2705at 3234.426 kb on + strandat 3234.765 kb on + strand, within Shewana3_2706at 3234.853 kb on - strand, within Shewana3_2706at 3235.068 kb on - strandat 3235.200 kb on - strandat 3235.410 kb on - strand, within Shewana3_2707at 3235.548 kb on - strand, within Shewana3_2707at 3235.635 kb on + strand, within Shewana3_2707at 3235.658 kb on - strand, within Shewana3_2707at 3235.703 kb on - strand, within Shewana3_2707at 3235.812 kb on - strand, within Shewana3_2707at 3235.868 kb on - strand, within Shewana3_2707at 3235.907 kb on - strand, within Shewana3_2707at 3235.954 kb on - strand, within Shewana3_2707at 3236.077 kb on + strand, within Shewana3_2707at 3236.179 kb on + strand, within Shewana3_2707at 3236.264 kb on + strand, within Shewana3_2707at 3236.504 kb on + strand, within Shewana3_2707at 3236.504 kb on + strand, within Shewana3_2707at 3236.580 kb on + strand, within Shewana3_2707at 3236.620 kb on + strand, within Shewana3_2707at 3236.686 kb on + strandat 3236.694 kb on - strandat 3236.981 kb on + strandat 3236.988 kb on - strandat 3237.025 kb on - strandat 3237.092 kb on - strandat 3237.116 kb on - strandat 3237.435 kb on - strandat 3237.463 kb on - strandat 3237.642 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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3,234,190 - Shewana3_2705 0.47 -0.5
3,234,274 - Shewana3_2705 0.65 -0.3
3,234,426 + -0.4
3,234,765 + Shewana3_2706 0.43 -0.2
3,234,853 - Shewana3_2706 0.66 -0.2
3,235,068 - -1.2
3,235,200 - -2.8
3,235,410 - Shewana3_2707 0.16 -2.2
3,235,548 - Shewana3_2707 0.24 -2.8
3,235,635 + Shewana3_2707 0.29 +0.7
3,235,658 - Shewana3_2707 0.30 -2.1
3,235,703 - Shewana3_2707 0.33 -3.6
3,235,812 - Shewana3_2707 0.39 -1.6
3,235,868 - Shewana3_2707 0.42 -3.1
3,235,907 - Shewana3_2707 0.45 -2.1
3,235,954 - Shewana3_2707 0.47 -2.0
3,236,077 + Shewana3_2707 0.55 -2.7
3,236,179 + Shewana3_2707 0.61 -2.8
3,236,264 + Shewana3_2707 0.65 +0.7
3,236,504 + Shewana3_2707 0.79 -1.5
3,236,504 + Shewana3_2707 0.79 -2.7
3,236,580 + Shewana3_2707 0.84 -1.9
3,236,620 + Shewana3_2707 0.86 -2.5
3,236,686 + -3.8
3,236,694 - -3.5
3,236,981 + -0.2
3,236,988 - -0.7
3,237,025 - -0.2
3,237,092 - -1.0
3,237,116 - -0.1
3,237,435 - +0.3
3,237,463 - +0.6
3,237,642 + +0.7

Or see this region's nucleotide sequence