Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2555

Experiment: Inosine (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_2554 and Shewana3_2555 are separated by 342 nucleotidesShewana3_2555 and Shewana3_2556 are separated by 116 nucleotidesShewana3_2556 and Shewana3_2557 are separated by 180 nucleotides Shewana3_2554: Shewana3_2554 - 6-phosphogluconate dehydrogenase, NAD-binding (RefSeq), at 3,056,179 to 3,057,054 _2554 Shewana3_2555: Shewana3_2555 - thioesterase superfamily protein (RefSeq), at 3,057,397 to 3,057,876 _2555 Shewana3_2556: Shewana3_2556 - hypothetical protein (RefSeq), at 3,057,993 to 3,058,361 _2556 Shewana3_2557: Shewana3_2557 - 3-oxoacyl-[acyl-carrier-protein] synthase II (RefSeq), at 3,058,542 to 3,059,780 _2557 Position (kb) 3057 3058Strain fitness (log2 ratio) -3 -2 -1 0 1at 3056.500 kb on + strand, within Shewana3_2554at 3056.500 kb on + strand, within Shewana3_2554at 3056.508 kb on - strand, within Shewana3_2554at 3056.558 kb on - strand, within Shewana3_2554at 3056.613 kb on - strand, within Shewana3_2554at 3056.938 kb on + strand, within Shewana3_2554at 3056.941 kb on - strand, within Shewana3_2554at 3056.962 kb on + strand, within Shewana3_2554at 3056.962 kb on + strand, within Shewana3_2554at 3056.970 kb on - strandat 3056.984 kb on - strandat 3056.984 kb on - strandat 3057.107 kb on + strandat 3057.146 kb on + strandat 3057.161 kb on - strandat 3057.248 kb on + strandat 3057.371 kb on - strandat 3057.474 kb on + strand, within Shewana3_2555at 3057.540 kb on + strand, within Shewana3_2555at 3057.617 kb on - strand, within Shewana3_2555at 3057.701 kb on - strand, within Shewana3_2555at 3058.599 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
remove
3,056,500 + Shewana3_2554 0.37 -1.0
3,056,500 + Shewana3_2554 0.37 +0.6
3,056,508 - Shewana3_2554 0.38 -0.2
3,056,558 - Shewana3_2554 0.43 -0.8
3,056,613 - Shewana3_2554 0.50 +0.5
3,056,938 + Shewana3_2554 0.87 +0.4
3,056,941 - Shewana3_2554 0.87 +0.4
3,056,962 + Shewana3_2554 0.89 +0.2
3,056,962 + Shewana3_2554 0.89 +0.0
3,056,970 - -2.4
3,056,984 - -0.8
3,056,984 - +0.3
3,057,107 + -0.4
3,057,146 + +0.1
3,057,161 - +0.2
3,057,248 + -0.1
3,057,371 - -0.3
3,057,474 + Shewana3_2555 0.16 -3.4
3,057,540 + Shewana3_2555 0.30 -1.9
3,057,617 - Shewana3_2555 0.46 -1.4
3,057,701 - Shewana3_2555 0.63 -1.7
3,058,599 - +0.9

Or see this region's nucleotide sequence