Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2442

Experiment: Inosine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthemH and adk are separated by 79 nucleotidesadk and Shewana3_2442 are separated by 141 nucleotidesShewana3_2442 and Shewana3_2443 are separated by 117 nucleotides Shewana3_2440: hemH - ferrochelatase (RefSeq), at 2,926,516 to 2,927,562 hemH Shewana3_2441: adk - adenylate kinase (RefSeq), at 2,927,642 to 2,928,286 adk Shewana3_2442: Shewana3_2442 - thioredoxin domain-containing protein (RefSeq), at 2,928,428 to 2,929,291 _2442 Shewana3_2443: Shewana3_2443 - heat shock protein 90 (RefSeq), at 2,929,409 to 2,931,322 _2443 Position (kb) 2928 2929 2930Strain fitness (log2 ratio) -1 0 1at 2928.434 kb on + strandat 2928.561 kb on + strand, within Shewana3_2442at 2928.571 kb on - strand, within Shewana3_2442at 2928.792 kb on + strand, within Shewana3_2442at 2928.914 kb on + strand, within Shewana3_2442at 2929.185 kb on - strand, within Shewana3_2442at 2929.378 kb on + strandat 2929.483 kb on - strandat 2930.030 kb on - strand, within Shewana3_2443

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine (C)
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2,928,434 + -0.4
2,928,561 + Shewana3_2442 0.15 +1.7
2,928,571 - Shewana3_2442 0.17 -0.2
2,928,792 + Shewana3_2442 0.42 +0.6
2,928,914 + Shewana3_2442 0.56 +0.4
2,929,185 - Shewana3_2442 0.88 -0.0
2,929,378 + -0.9
2,929,483 - -0.4
2,930,030 - Shewana3_2443 0.32 -1.6

Or see this region's nucleotide sequence